120 research outputs found

    Enveloping Sophisticated Tools into Process-Centered Environments

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    We present a tool integration strategy based on enveloping pre-existing tools without source code modifications or recompilation, and without assuming an extension language, application programming interface, or any other special capabilities on the part of the tool. This Black Box enveloping (or wrapping) idea has existed for a long time, but was previously restricted to relatively simple tools. We describe the design and implementation of, and experimentation with, a new Black Box enveloping facility intended for sophisticated tools --- with particular concern for the emerging class of groupware applications

    Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

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    A major use of the 1000 Genomes Project (1000GP) data is genotype imputation in genome-wide association studies (GWAS). Here we develop a method to estimate haplotypes from low-coverage sequencing data that can take advantage of single-nucleotide polymorphism (SNP) microarray genotypes on the same samples. First the SNP array data are phased to build a backbone (or 'scaffold') of haplotypes across each chromosome. We then phase the sequence data 'onto' this haplotype scaffold. This approach can take advantage of relatedness between sequenced and non-sequenced samples to improve accuracy. We use this method to create a new 1000GP haplotype reference set for use by the human genetic community. Using a set of validation genotypes at SNP and bi-allelic indels we show that these haplotypes have lower genotype discordance and improved imputation performance into downstream GWAS samples, especially at low-frequency variants. © 2014 Macmillan Publishers Limited. All rights reserved

    Decentralized service-level monitoring using network threshold crossing alerts

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    Why Architects and Laypersons Judge Buildings Differently: Cognitive Properties and Physical Bases

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    Architects and laypersons experience buildings quite differently; this study investigated the physical and cognitive underpinnings of these differences. Laypersons and practicing architects assessed the global aesthetic quality and six key cognitive properties (complexity, clarity, friendliness, originality, meaningfulness, and ruggedness) of 42 large contemporary buildings, and 59 physical features of each building were independently scored. Lens model analyses revealed how these physical features are interpreted differently by the two groups, which apparently leads them to experience different cognitive properties, which in turn leads to different aesthetic conclusions. However, the results also suggest how architects and laypersons might better understand each other
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