Computational identification of anthocyanin-specific transcription factors using a rice microarray and maximum boundary range algorithm

This study identifies 2,617 candidate genes related to anthocyanin biosynthesis in rice using microarray analysis and a newly developed maximum boundary range algorithm. Three seed developmental stages were examined in white cultivar and two black Dissociation insertion mutants. The resultant 235 transcription factor genes found to be associated with anthocyanin were classified into nine groups. It is compared the 235 genes by transcription factor analysis and 593 genes from among clusters of COGs related to anthocyanin functions. Total 32 genes were found to be expressed commonly. Among these, 9 unknown and hypothetical genes were revealed to be expressed at each developmental stage and were verified by RT-PCR. These genes most likely play regulatory roles in either anthocyanin production or metabolism during flavonoid biosynthesis. While these genes require further validation, our results underline the potential usefulness of the newly developed algorithm

Thermodynamic properties of the d-density wave order in cuprates

We solve a popular effective Hamiltonian of competing $d$-density wave and d-wave superconductivity orders self-consistently at the mean-field level for a wide range of doping and temperature. The theory predicts a temperature dependence of the $d$-density wave order parameter seemingly inconsistent with the neutron scattering and $\mu$SR experiments of the cuprates. We further calculate thermodynamic quantities, such as chemical potential, entropy and specific heat. Their distinct features can be used to test the existence of the $d$-density wave order in cuprates.Comment: changed to 4 pages and 4 figures. More reference added. Accepted by Phys. Rev.

Vortex structure in d-density wave scenario of pseudogap

We investigate the vortex structure assuming the d-density wave scenario of the pseudogap. We discuss the profiles of the order parameters in the vicinity of the vortex, effective vortex charge and the local density of states. We find a pronounced modification of these quantities when compared to a purely superconducting case. Results have been obtained for a clean system as well as in the presence of a nonmagnetic impurity. We show that the competition between superconductivity and the density wave may explain some experimental data recently obtained for high-temperature superconductors. In particular, we show that the d-density wave scenario explains the asymmetry of the gap observed in the vicinity of the vortex core.Comment: 8 pages, 10 figure

Single-top Wt-channel production matched with parton showers using the POWHEG method

We present results for the next-to-leading order calculation of single-top Wt-channel production interfaced to Shower Monte Carlo programs, implemented according to the POWHEG method. A comparison with MC@NLO is carried out. Results obtained using the PYTHIA shower are also shown and the effect of typical cuts is briefly discussed.Comment: 23 pages, 9 figure

A fucoidan plant drink reduces Helicobacter pylori load in the stomach: a real-world study

BACKGROUND: Helicobacter pylori (Hp) infection is highly prevalent globally and is predominantly managed by antibiotics. Recently, the anti-adhesive, antioxidant, antitoxin, immunomodulatory, anti-coagulant, and anti-infective activities of fucoidan, a polysaccharide extracted from brown seaweeds, have been widely studied, and the results showed promise. Fucoidan has the potential to be utilized in Hp eradication therapy. Our present clinical study was designed to evaluate the efficiency of Lewuyou®, a fucoidan plant drink (FPD) in eradicating Hp in humans. METHODS: This multi-center, clinical study was conducted between October 2020 and July 2021. Hp infection was confirmed by urea breath test (UBT). A total of 122 patients with confirmed Hp infection were enrolled; after exclusion of incomplete data, 85 eligible patients (37 males and 48 females aged 20–81 years) were included in the final analysis. FPD (50 mL per vial) was orally administered twice daily for a 4-week cycle, and 41 patients completed an 8-week cycle. RESULTS: No adverse event (AE) was reported in all 122 participants who had consumed FPD. The Hp eradication rate and clearance rate were 77.6% (66/85) and 20.0% (17/85), respectively, after 4 weeks of FPD consumption and 80.5% (33/41) and 26.8 (11/41) , respectively, after 8 weeks of consumption. CONCLUSIONS: The 4- and 8-week protocols of FPD consumption were safe and effective at reducing Hp load on the gastric mucosa, with Hp eradicated in the majority of participants

Effects of oxygen adsorption on carbon nanotube field emitters

Effects of oxygen adsorption on the field emission of carbon nanotubes are studied through first-principles calculations. Calculated emission currents are significantly enhanced when oxygen is adsorbed at the tip and the underlying physics is explained in terms of the change in the electronic structure by oxidation and the local field increase at the adsorption site. The issue of the current degradation accompanied by the oxidative etching is also addressed. The field-emission-microscopy images on the phosphor screen are simulated, displaying various patterns characteristic of each adsorption configuration.open546

Top A_FB at the Tevatron vs. charge asymmetry at the LHC in chiral U(1) flavor models with flavored Higgs doublets

We consider the top forward-backward (FB) asymmetry at the Tevatron and top charge asymmetry at the LHC within chiral U(1)^\prime models with flavor-dependent U(1)^\prime charges and flavored Higgs fields, which were introduced in the ref. [65]. The models could enhance not only the top forward-backward asymmetry at Tevatron, but also the top charge asymmetry at LHC, without too large same-sign top pair production rates. We identify parameter spaces for the U(1)^\prime gauge boson and (pseudo)scalar Higgs bosons where all the experimental data could be accommodated, including the case with about 125 GeV Higgs boson, as suggested recently by ATLAS and CMS.Comment: 11 pages, 6 figures, figures and discussion adde

Partial Wave Analysis of J/ψ→γ(K+K−π+π−)J/\psi \to \gamma (K^+K^-\pi^+\pi^-)

BES data on $J/\psi \to \gamma (K^+K^-\pi^+\pi^-)$ are presented. The $K^*\bar K^*$ contribution peaks strongly near threshold. It is fitted with a broad $0^{-+}$ resonance with mass $M = 1800 \pm 100$ MeV, width $\Gamma = 500 \pm 200$ MeV. A broad $2^{++}$ resonance peaking at 2020 MeV is also required with width $\sim 500$ MeV. There is further evidence for a $2^{-+}$ component peaking at 2.55 GeV. The non-$K^*\bar K^*$ contribution is close to phase space; it peaks at 2.6 GeV and is very different from $K^{*}\bar{K^{*}}$.Comment: 15 pages, 6 figures, 1 table, Submitted to PL