Dissipation and mixing during the onset of stratification in a temperate lake, Windermere

Acoustic Doppler Current Profilers and chains of temperature sensors were used to observe the spring transition to stable stratification over a 55 day period in a temperate lake. Observations of the flow structure were complemented by measurements of dissipation, based on the Structure Function method, near the lake bed and in the upper part of the water column. During complete vertical mixing, wind-driven motions had horizontally isotropic velocities with roughly equal barotropic and baroclinic kinetic energy. Dissipation was closely correlated with the wind-speed cubed, indicating law of the wall scaling, and had peak values of ~1 x 10-5.5 W kg-1 at 10 m depth during maximum wind forcing (W~ 15 m s-1). As stratification developed, the flow evolved into a predominantly baroclinic regime dominated by the first mode internal seiche, with root mean square (rms) axial flow speeds of ~2-3 cm-1; ~ 2.5-times the transverse component. At 2.8 m above the bed, most of the dissipation occurred in a number of strong maxima coinciding with peaks of near-bed flow. In the pycnocline, dissipation was low most of the time, but with pronounced maxima (reaching ~1 x 10-5 W kg-1) closely related to the local velocity shear. The downward diffusive heat flux across the pycnocline over 27.5 days accounted for ~ 70% of the temperature rise in the water column below. Total lake kinetic energy increased by a factor of 3 between mixed and stratified regimes, in spite of reduced wind forcing, indicating less efficient damping in stable conditions

Summary report on the geology of the proposed HS2 Route (3) in the Chesham and Amersham Constituency

This brief open-file report summarises the information available from the British Geological Survey (BGS), a component body of the Natural Environment Research Council (NERC), on the geology, hydrogeology and potential geological hazards of the proposed HS2 Route 3 within the Chesham and Amersham Constituency, and surrounding areas. The report summarises the geology and hydrogeology of the district and highlights geological and hydrogeological considerations that may need further investigation along the route. Further review and analysis of existing data and possible field investigation would be required to confirm details of the local geology. The report was requested by Mrs Cheryl Gillan MP following a meeting with Dr Martin Smith, Head of Geology & Landscapes programme, on Monday 16th May 2011 at the offices of the Secretary of State for Wales in Whitehall

Anomalous enrichment of molybdenum and associated metals in Lower Jurassic (Lias Group) black shales of central England, as revealed by systematic geochemical surveys

Systematic multi-media geochemical surveying by the British Geological Survey's Geochemical Baseline Survey of the Environment (G-BASE) project has revealed significant anomalous patterns of enrichment for a suite of elements – copper (Cu) and uranium (U) – with exceptionally high levels of molybdenum (Mo), in soils and stream sediments in central England. Enrichment of these elements is most often associated with organic-rich, sulphidic ‘black shale’ lithofacies, typical of oxygen-deficient, euxinic depositional environments. The main anomaly lies between Evesham and Rugby where the bedrock comprises the Blue Lias and Charmouth Mudstone formations. Concentrations of Mo are particularly high, reaching soil values of 50 mg/kg, where the regional background is <2 mg/kg. Analysis of black shale partings sampled from rhythmic limestone–shale couplets reveal Mo levels up to 320 mg/kg. Complementary X-ray diffraction analyses suggest that the anomalous Mo levels are hosted by sulphidic (pyrite) rather than organic phases. High Mo levels may have significant impacts on local agriculture, as well as revealing hitherto unsuspected periods of hypoxic and anoxic bottom water sedimentation within localised basins in central England during the Early Jurassic. Rhythmic alternations of thin beds of Mo-rich, sulphidic black shale (euxinic) with bioclastic and micritic limestone (oxic) represent primary depositional cycles rather than a diagenetic origin. The bed-scale cyclicity is attributed to previously described orbitally-induced precession cycles that influenced climate. These resulted in periods of basin anoxia and black shale sedimentation during periods of enhanced terrestrial fresh-water run-off (possibly below a low-salinity pycnocline), alternating with periods of oxygenation of the sea-water and bottom sediments during overturn of the water column

T-bet controls intestinal mucosa immune responses via repression of type 2 innate lymphoid cell function

Innate lymphoid cells (ILCs) play an important role in regulating immune responses at mucosal surfaces. The transcription factor T-bet is crucial for the function of ILC1s and NCR+ ILC3s and constitutive deletion of T-bet prevents the development of these subsets. Lack of T-bet in the absence of an adaptive immune system causes microbiota-dependent colitis to occur due to aberrant ILC3 responses. Thus, T-bet expression in the innate immune system has been considered to dampen pathogenic immune responses. Here, we show that T-bet plays an unexpected role in negatively regulating innate type 2 responses, in the context of an otherwise intact immune system. Selective loss of T-bet in ILCs leads to the expansion and increased activity of ILC2s, which has a functionally important impact on mucosal immunity, including enhanced protection from Trichinella spiralis infection and inflammatory colitis. Mechanistically, we show that T-bet controls the intestinal ILC pool through regulation of IL-7 receptor signalling. These data demonstrate that T-bet expression in ILCs acts as the key transcriptional checkpoint in regulating pathogenic vs. protective mucosal immune responses, which has significant implications for the understanding of the pathogenesis of inflammatory bowel diseases and intestinal infections

The Effect of Chemical Information on the Spatial Distribution of Fruit Flies: II Parameterization, Calibration, and Sensitivity

In a companion paper (Lof et al., in Bull. Math. Biol., 2008), we describe a spatio-temporal model for insect behavior. This model includes chemical information for finding resources and conspecifics. As a model species, we used Drosophila melanogaster, because its behavior is documented comparatively well

A basin- to channel-scale unstructured grid hurricane storm surge model applied to southern Louisiana

Southern Louisiana is characterized by low-lying topography and an extensive network of sounds, bays, marshes, lakes, rivers, and inlets that permit widespread inundation during hurricanes. A basin- to channel-scale implementation of the Advanced Circulation (ADCIRC) unstructured grid hydrodynamic model has been developed that accurately simulates hurricane storm surge, tides, and river flow in this complex region. This is accomplished by defining a domain and computational resolution appropriate for the relevant processes, specifying realistic boundary conditions, and implementing accurate, robust, and highly parallel unstructured grid numerical algorithms. The model domain incorporates the western North Atlantic, the Gulf of Mexico, and the Caribbean Sea so that interactions between basins and the shelf are explicitly modeled and the boundary condition specification of tidal and hurricane processes can be readily defined at the deep water open boundary. The unstructured grid enables highly refined resolution of the complex overland region for modeling localized scales of flow while minimizing computational cost. Kinematic data assimilative or validated dynamic-modeled wind fields provide the hurricane wind and pressure field forcing. Wind fields are modified to incorporate directional boundary layer changes due to overland increases in surface roughness, reduction in effective land roughness due to inundation, and sheltering due to forested canopies. Validation of the model is achieved through hindcasts of Hurricanes Betsy and Andrew. A model skill assessment indicates that the computed peak storm surge height has a mean absolute error of 0.30 m

A novel tumor-based epithelial-to-mesenchymal transition score that associates with prognosis and metastasis in patients with stage II/III colorectal cancer

It is increasingly appreciated that host factors within the tumor center and microenvironment play a key role in dictating colorectal cancer (CRC) outcomes. As a result, the metastatic process has now been defined as a result of epithelial–mesenchymal transition (EMT). Establishment of the role of EMT within the tumor center and its effect on the tumor microenvironment would be beneficial for prognosis and therapeutic intervention in CRC. The present study assessed five immunohistochemical EMT markers within the tumor center on a 185 Stage II/III CRC patient tissue microarray. In 185 patients with CRC, cytoplasmic snail (HR 1.94 95% confidence interval [CI] 1.15–3.29, p = 0.012) and a novel combined EMT score (HR 3.86 95% CI 2.17–6.86, p < 0.001) were associated with decreased cancer‐specific survival. The combined EMT score was also associated with increased tumor budding (p = 0.046), and systemic inflammation (p = 0.007), as well as decreased memory T‐cells within the stroma (p = 0.030) and at the invasive margin (p = 0.035). Furthermore, the combined EMT score was associated with cancer‐specific survival independent of TNM‐stage (HR 4.12 95% CI 2.30–7.39, p < 0.001). In conclusion, a novel combined EMT score stratifies patient's survival in Stage II/III CRC and associates with key factors of tumor metastasis. Therefore, the combined EMT score could be used to identify patients at risk of micrometastases and who may benefit from standard adjuvant therapy, potentially in combination with EMT blockade