Autophagy orchestrates the crosstalk between cells and organs

Over the recent years, it has become apparent that a deeper understanding of cell-to-cell and organ-to-organ communication is necessary to fully comprehend both homeostatic and pathological states. Autophagy is indispensable for cellular development, function, and homeostasis. A crucial aspect is that autophagy can also mediate these processes through its secretory role. The autophagy-derived secretome relays its extracellular signals in the form of nutrients, proteins, mitochondria, and extracellular vesicles. These crosstalk mediators functionally shape cell fate decisions, tissue microenvironment and systemic physiology. The diversity of the secreted cargo elicits an equally diverse type of responses, which span over metabolic, inflammatory, and structural adaptations in disease and homeostasis. We review here the emerging role of the autophagy-derived secretome in the communication between different cell types and organs and discuss the mechanisms involved

Hydrogen bond dissociation and reformation in methanol oligomers following hydroxyl stretch relaxation

Vibrational relaxation and hydrogen bond dynamics in methanol-d dissolved in CCl 4 have been measured with ultrafast infrared pump-probe spectroscopy. We excited the subensemble of methanol-d molecules both accepting and donating hydrogen bonds at ∼2500 cm -1 . Following vibrational relaxation with a ∼500 fs lifetime, the signal does not decay to zero. Rather, the signal increases to a second maximum at ∼4 ps. The decay from the second maximum occurs on two time scales. We propose a model in which hydrogen bond dissociation, following vibrational relaxation, decreases the concentration of methanol-d molecules that accept and donate hydrogen bonds and produce the observed long-lived bleach of the absorption signal. Using a set of coupled kinetic equations, the time constants for hydrogen bond dissociation and reformation have been determined. Hydrogen bond breaking occurs with ∼200 fs and ∼2 ps time constants. We attribute the fast rate to a direct breaking mechanism wherein the excited hydroxyl stretch decays into modes that directly lead to the hydrogen bond dissociation. The slower rate of breaking is attributed to an indirect mechanism wherein the dissociation of hydrogen bonds follows vibrational energy flow from the initially excited molecule to other components of the same oligomer. The final stage of relaxation, after the second maximum, involves reformation of transiently broken hydrogen bonds. The bonds that break directly recover with ∼7 ps and .10 ns time constants, while the bonds that break indirectly recover with ∼20 ps and .10 ns time constants. Experiments conducted on ethanol-d solutions in CCl 4 demonstrate that the same vibrational relaxation and hydrogen bond dynamic events occur with very similar amplitudes and rate constants. Measurements of the rates of spectral diffusion and polarization anisotropy decay via vibrational excitation transfer and orientational relaxation verify that the initial fast decay of the signal is dominated by vibrational relaxation

Sensitivity of northeastern US surface ozone predictions to the representation of atmospheric chemistry in the Community Regional Atmospheric Chemistry Multiphase Mechanism (CRACMMv1.0)

Chemical mechanisms describe how emissions of gases and particles evolve in the atmosphere and are used within chemical transport models to evaluate past, current, and future air quality. Thus, a chemical mechanism must provide robust and accurate predictions of air pollutants if it is to be considered for use by regulatory bodies. In this work, we provide an initial evaluation of the Community Regional Atmospheric Chemistry Multiphase Mechanism (CRACMMv1.0) by assessing CRACMMv1.0 predictions of surface ozone (O3) across the northeastern US during the summer of 2018 within the Community Multiscale Air Quality (CMAQ) modeling system. CRACMMv1.0 O3 predictions of hourly and maximum daily 8 h average (MDA8) ozone were lower than those estimated by the Regional Atmospheric Chemistry Mechanism with aerosol module 6 (RACM2_ae6), which better matched surface network observations in the northeastern US (RACM2_ae6 mean bias of +4.2 ppb for all hours and +4.3 ppb for MDA8; CRACMMv1.0 mean bias of +2.1 ppb for all hours and +2.7 ppb for MDA8). Box model calculations combined with results from CMAQ emission reduction simulations indicated a high sensitivity of O3 to compounds with biogenic sources. In addition, these calculations indicated the differences between CRACMMv1.0 and RACM2_ae6 O3 predictions were largely explained by updates to the inorganic rate constants (reflecting the latest assessment values) and by updates to the representation of monoterpene chemistry. Updates to other reactive organic carbon systems between RACM2_ae6 and CRACMMv1.0 also affected ozone predictions and their sensitivity to emissions. Specifically, CRACMMv1.0 benzene, toluene, and xylene chemistry led to efficient NOx cycling such that CRACMMv1.0 predicted controlling aromatics reduces ozone without rural O3 disbenefits. In contrast, semivolatile and intermediate-volatility alkanes introduced in CRACMMv1.0 acted to suppress O3 formation across the regional background through the sequestration of nitrogen oxides (NOx) in organic nitrates. Overall, these analyses showed that the CRACMMv1.0 mechanism within the CMAQ model was able to reasonably simulate ozone concentrations in the northeastern US during the summer of 2018 with similar magnitude and diurnal variation as the current operational Carbon Bond (CB6r3_ae7) mechanism and good model performance compared to recent modeling studies in the literature.</p

Epoxide as a precursor to secondary organic aerosol formation from isoprene photooxidation in the presence of nitrogen oxides

Isoprene is a substantial contributor to the global secondary organic aerosol (SOA) burden, with implications for public health and the climate system. The mechanism by which isoprene-derived SOA is formed and the influence of environmental conditions, however, remain unclear. We present evidence from controlled smog chamber experiments and field measurements that in the presence of high levels of nitrogen oxides (NOx = NO + NO2) typical of urban atmospheres, 2-methyloxirane-2-carboxylic acid (methacrylic acid epoxide, MAE) is a precursor to known isoprene-derived SOA tracers, and ultimately to SOA. We propose that MAE arises from decomposition of the OH adduct of methacryloylperoxynitrate (MPAN). This hypothesis is supported by the similarity of SOA constituents derived from MAE to those from photooxidation of isoprene, methacrolein, and MPAN under high-NOx conditions. Strong support is further derived from computational chemistry calculations and Community Multiscale Air Quality model simulations, yielding predictions consistent with field observations. Field measurements taken in Chapel Hill, North Carolina, considered along with the modeling results indicate the atmospheric significance and relevance of MAE chemistry across the United States, especially in urban areas heavily impacted by isoprene emissions. Identification of MAE implies a major role of atmospheric epoxides in forming SOA from isoprene photooxidation. Updating current atmospheric modeling frameworks with MAE chemistry could improve the way that SOA has been attributed to isoprene based on ambient tracer measurements, and lead to SOA parameterizations that better capture the dependency of yield on NOx

Adipocyte autophagy limits gut inflammation by controlling oxylipin and IL-10

Lipids play a major role in inflammatory diseases by altering inflammatory cell functions, either through their function as energy substrates or as lipid mediators such as oxylipins. Autophagy, a lysosomal degradation pathway that limits inflammation, is known to impact on lipid availability, however, whether this controls inflammation remains unexplored. We found that upon intestinal inflammation visceral adipocytes upregulate autophagy and that adipocyte-specific loss of the autophagy gene Atg7 exacerbates inflammation. While autophagy decreased lipolytic release of free fatty acids, loss of the major lipolytic enzyme Pnpla2/Atgl in adipocytes did not alter intestinal inflammation, ruling out free fatty acids as anti-inflammatory energy substrates. Instead, Atg7-deficient adipose tissues exhibited an oxylipin imbalance, driven through an NRF2-mediated upregulation of Ephx1. This shift reduced secretion of IL-10 from adipose tissues, which was dependent on the cytochrome P450-EPHX pathway, and lowered circulating levels of IL-10 to exacerbate intestinal inflammation. These results suggest an underappreciated fat-gut crosstalk through an autophagy-dependent regulation of anti-inflammatory oxylipins via the cytochrome P450-EPHX pathway, indicating a protective effect of adipose tissues for distant inflammation

Cell-extrinsic autophagy in mature adipocytes regulates anti-inflammatory response to intestinal tissue injury through lipid mobilization

Autophagy is a critical cellular recycling pathway which is genetically linked to the development of intestinal inflammation in humans. Inflammation drives adipose tissue breakdown and provision of major nutrients such as free fatty acids (FFA). However, the effect of autophagy-mediated FFA release by adipocytes in immune-mediated inflammatory diseases remains unexplored. In a mouse model of intestinal inflammation, we found that visceral adipocytes upregulate autophagy at peak inflammation. Adipocyte-specific loss of the key autophagy gene Atg7 (Atg7Ad) resulted in the exacerbation of intestinal inflammation. TNFα-induced lipolysis was impaired in Atg7-deficient adipocytes leading to the reduced availability of several FFA species, and decreased expression of the FFA transporter CD36 on adipose tissue macrophages (ATMs). Visceral adipose tissues from Atg7Ad mice released less IL-10 resulting in lower levels of circulating IL-10 in colitis. ATMs present the main source of adipose tissue-derived IL-10 during colitis. In vitro assays confirmed that FFA restriction from macrophages reduced CD36 expression and diminished IL-10 production. Taken together, our study demonstrates that autophagy-mediated FFA release from adipocytes directs anti-inflammatory responses in ATMs, which in turn conveys protective effects for distant intestinal inflammation.</p

Polyamine metabolism is a central determinant of helper T cell lineage fidelity

Polyamine synthesis represents one of the most profound metabolic changes during T cell activation, but the biological implications of this are scarcely known. Here, we show that polyamine metabolism is a fundamental process governing the ability of CD4+ helper T cells (TH) to polarize into different functional fates. Deficiency in ornithine decarboxylase, a crucial enzyme for polyamine synthesis, results in a severe failure of CD4+ T cells to adopt correct subset specification, underscored by ectopic expression of multiple cytokines and lineage-defining transcription factors across TH cell subsets. Polyamines control TH differentiation by providing substrates for deoxyhypusine synthase, which synthesizes the amino acid hypusine, and mice in which T cells are deficient for hypusine develop severe intestinal inflammatory disease. Polyamine-hypusine deficiency caused widespread epigenetic remodeling driven by alterations in histone acetylation and a re-wired tricarboxylic acid (TCA) cycle. Thus, polyamine metabolism is critical for maintaining the epigenome to focus TH cell subset fidelity