Resource Partitioning in Seven Species of Sympatric Intertidal Chitons (Mollusca: Polyplacophora)

Space (intertidal height and location/exposure on the rock surface), and food {gut contents) were partitioned among 7 species of sympatric intertidal chitons: Mopaliidae - Mopalia hindsii, M. ciliata, ~· lignosa, M. muscosa, and Katharina tunicata; and Ischnochitonidae - Tonicella lineata and Cyanoplax dentiens. Species distribution relative to intertidal height (-0.3m to +0.9m) showed significant differences. M. hindsii, ~· ciliata, M. lignosa, and T. lineata preferred slopes or undersides of rocks while ~· muscosa, K. tunicata, and c. dentiens occurred on the top horizontal surfaces or in more exposed habitats. Chitons differed significantly in their associations with Lithothamnion, macrophytic algae, Ulva, encrusting red algae {Petrocelis and Hildenbrandia), and invertebrates. Considerable overlap in food types occurred, however, significant differences in utilization of Ulva and diatoms and near significant differences in utilization of invertebrates, filamentous red algae, and Lithotharnnion suggest food resource partitioning. Certain species appeared to select diatoms, Ulva, and invertebrates from eight food types available in the microhabitat. Movement rates, activity, and behavior differed significantly in one tank experiment and may further ecologically separate the chiton species. However, field studies did not find significant differences among chiton species in distance moved, range of movement, and movement patterns

Recognising the potential of large animals for modelling neuromuscular junction physiology and disease

The aetiology and pathophysiology of many diseases of the motor unit remain poorly understood and the role of the neuromuscular junction (NMJ) in this group of disorders is particularly overlooked, especially in humans, when these diseases are comparatively rare. However, elucidating the development, function and degeneration of the NMJ is essential to uncover its contribution to neuromuscular disorders, and to explore potential therapeutic avenues to treat these devastating diseases. Until now, an understanding of the role of the NMJ in disease pathogenesis has been hindered by inherent differences between rodent and human NMJs: stark contrasts in body size and corresponding differences in associated axon length underpin some of the translational issues in animal models of neuromuscular disease. Comparative studies in large mammalian models, including examination of naturally occurring, highly prevalent animal diseases and evaluation of their treatment, might provide more relevant insights into the pathogenesis and therapy of equivalent human diseases. This review argues that large animal models offer great potential to enhance our understanding of the neuromuscular system in health and disease, and in particular, when dealing with diseases for which nerve length dependency might underly the pathogenesis

Locating a novel autosomal recessive genetic condition using only WGS data from three cases and six controls; a case study of a new variant in the cattle glucokinase gene

New Mendelian genetic conditions, which adversely affect livestock, arise all the time. To manage them effectively, some methods need to be devised that are quick and accurate. Until recently, finding the causal genomic site of a new autosomal recessive genetic disease has required a two-stage approach using single-nucleotide polymorphism (SNP) chip genotyping to locate the region containing the new variant. This region is then explored using fine-mapping methods to locate the actual site of the new variant. This study explores bioinformatic methods that can be used to identify the causative variants of recessive genetic disorders with full penetrance with just nine whole genome-sequenced animals to simplify and expedite the process to a one-step procedure. Using whole genome sequencing of only three cases and six carriers, the site of a novel variant causing perinatal mortality in Irish moiled calves was located. Four methods were used to interrogate the variant call format (VCF) data file of these nine animals, they are genotype criteria (GCR), autozygosity-by-difference (ABD), variant prediction scoring, and registered SNP information. From more than nine million variants in the VCF file, only one site was identified by all four methods (Chr4: g.77173487A>T (ARS-UCD1.2 (GCF_002263795.1)). This site was a splice acceptor variant located in the glucokinase gene (GCK). It was verified on an independent sample of animals from the breed using genotyping by polymerase chain reaction at the candidate site and autozygosity-by-difference using SNP-chips. Both methods confirmed the candidate site. Investigation of the GCR method found that sites meeting the GCR were not evenly spread across the genome but concentrated in regions of long runs of homozygosity. Locating GCR sites was best performed using two carriers to every case, and the carriers should be distantly related to the cases, within the breed concerned. Fewer than 20 animals need to be sequenced when using the GCR and ABD methods together. The genomic site of novel autosomal recessive Mendelian genetic diseases can be located using fewer than 20 animals combined with two bioinformatic methods, autozygosity-by-difference, and genotype criteria. In many instances it may also be confirmed with variant prediction scoring. This should speed-up and simplify the management of new genetic diseases to a single-step process

Gene editing restores dystrophin expression in a canine model of Duchenne muscular dystrophy

Mutations in the gene encoding dystrophin, a protein that maintains muscle integrity and function, cause Duchenne muscular dystrophy (DMD). The deltaE50-MD dog model of DMD harbors a mutation corresponding to a mutational “hotspot” in the human DMD gene. We used adeno-associated viruses to deliver CRISPR gene editing components to four dogs and examined dystrophin protein expression 6 weeks after intramuscular delivery (n = 2) or 8 weeks after systemic delivery (n = 2). After systemic delivery in skeletal muscle, dystrophin was restored to levels ranging from 3 to 90% of normal, depending on muscle type. In cardiac muscle, dystrophin levels in the dog receiving the highest dose reached 92% of normal. The treated dogs also showed improved muscle histology. These large-animal data support the concept that, with further development, gene editing approaches may prove clinically useful for the treatment of DMD

Monte Carlo Transmission Line Modeling of Multilayer Optical Coatings for Performance Sensitivity of a Dichroic Filter for the ARIEL Space Telescope

Dichroic beamsplitters, or dichroics, are filters that rely on the optical interference that occurs within thin layers to ensure the transmission and reflection of selective wavelengths of an incident beam of light. These optical components consist of a substrate coated on one or both surfaces with multiple layers of thin films, the spectral design and construction of which determine the isolation of particular wavebands. Discrepancies between the measured and expected spectral performance of optical elements with such coatings can largely be attributed to depositions errors and uncertainties in the refractive indices of the materials. Our model uses two-dimensional transmission line modeling to evaluate the transmittance of light through multilayer coatings deposited on a substrate material for given materials, angle of incidence and polarisation. This model allows us to perform Monte Carlo simulations to obtain statistical information about the tolerance of the coating performance to systematic and random uncertainties from the manufacturing process, as well as from environmental changes in space. With the aid of accurate manufacturing recipes and uncertainty amplitudes from commercial manufacturers, this tool can predict variations in the optical performance that result from the propagation of each of these uncertainties for various hypothetical scenarios. One particular application of this study are the dichroics of the ARIEL space telescope. We compare the predicted optical performance with transmission measurements at cryogenic temperatures for one of the ARIEL dichroics, which show the specification compliance of this prototype after many thermal cycles

Terrestrial Alteration Mineral Assemblages in the NWA 10416 Olivine Phyric Shergottite

We report on the alteration history of the olivine-phyric, highly depleted (HD) shergottite, Northwest Africa (NWA) 10416, paying particular attention to the origin of the aqueous alteration seen affecting the meteorite’s olivine megacrysts. The rock’s interior displays 1 mm, zoned, altered olivine megacrysts set in a groundmass of clinopyroxene, unzoned olivine, and interstitial plagioclase and maskelynite. Synchrotron micro X-ray diffraction (µ-XRD) and transmission electron microscopy (TEM) show that plagioclase and maskelynite have been partially replaced by kaolinite. The relict olivine megacryst cores display a unique concentric colouration for Martian meteorites, having central amber-coloured zones surrounded by a brown mantle zone, with the rims remaining clear and unaltered. This colouration is a result of fluid alteration and partial replacement, with hydration. TEM analysis revealed the ∼200 nm scale banded and largely amorphous nature of the alteration, but with some (∼ 20%) relict crystalline olivine patches. Although the coloured olivine zones show cation and anion site vacancies compared to stoichiometric olivine, a relict igneous compositional trend is preserved in the megacrysts, from Mg-rich altered cores (Mg# = 76) to unaltered stoichiometric rims (Fo53). Synchrotron Fe-K X-ray absorption near-edge structure (XANES) analysis revealed that the coloured zones of the megacryst have different Fe oxidation values. High ferric contents are present in the brown mantle zones (Fe3+/ΣFe ≤ 0.92) and the amber zones (Fe3+/ΣFe ≤ 0.30), whereas the clear rims are ferrous. This suggests alteration occurred in an oxidising environment and that the sharp contrast in colour of the megacryst (brown to clear) is a record of a relict fluid reaction front. In order to test the terrestrial or extraterrestrial origin of the alteration, olivine material from a shock-melt vein was analysed by TEM. The analysis revealed 0.952 nm curved d-spacing’s from clay alteration undisturbed by any shock effects, strongly suggesting a terrestrial origin. The d-spacing values most likely represent a collapsed saponite or vermiculite, showing that in some places olivine has been replaced by crystalline clay. Oxygen isotope analysis of bulk (Δ17O = 0.309 ± 0.009 (2σ) ‰) and amber-coloured megacryst material (= 0.271 ± 0.002 (2σ) ‰), are also consistent with terrestrial alteration. We propose a model in which, during the meteorite’s time in Northwest Africa, low-temperature, likely acidic, groundwater exploited fractures. The fluid altered the olivine megacrysts in a way that was controlled by the pre-existing, igneous compositional zonation, with Mg-rich olivine being more susceptible to alteration in this fluid environment. The plagioclase and maskelynite were also altered to a high degree. After the alteration event it is likely that NWA 10416 had a significant residence time in Northwest Africa, accounting for terrestrial calcite and the dehydration of some clay phases

Feedforward control of thermal history in laser powder bed fusion: Toward physics-based optimization of processing parameters

We developed and applied a model-driven feedforward control approach to mitigate thermal-induced flaw formation in laser powder bed fusion (LPBF) additive manufacturing process. The key idea was to avert heat buildup in a LPBF part before it is printed by adapting process parameters layer-by-layer based on insights from a physics-based thermal simulation model. The motivation being to replace cumbersome empirical build-and-test parameter optimization with a physics-guided strategy. The approach consisted of three steps: prediction, analysis, and correction. First, the temperature distribution of a part was predicted rapidly using a graph theory-based computational thermal model. Second, the model-derived thermal trends were analyzed to isolate layers of potential heat buildup. Third, heat buildup in affected layers was corrected before printing by adjusting process parameters optimized through iterative simulations. The effectiveness of the approach was demonstrated experimentally on two separate build plates. In the first build plate, termed fixed processing, ten different nickel alloy 718 parts were produced under constant processing conditions. On a second identical build plate, called controlled processing, the laser power and dwell time for each part was adjusted before printing based on thermal simulations to avoid heat buildup. To validate the thermal model predictions, the surface temperature of each part was tracked with a calibrated infrared thermal camera. Post-process the parts were examined with non-destructive and destructive materials characterization techniques. Compared to fixed processing, parts produced under controlled processing showed superior geometric accuracy and resolution, finer grain size, increased microhardness, and reduced surface roughness