PReaCH: A Fast Lightweight Reachability Index using Pruning and Contraction Hierarchies

We develop the data structure PReaCH (for Pruned Reachability Contraction Hierarchies) which supports reachability queries in a directed graph, i.e., it supports queries that ask whether two nodes in the graph are connected by a directed path. PReaCH adapts the contraction hierarchy speedup techniques for shortest path queries to the reachability setting. The resulting approach is surprisingly simple and guarantees linear space and near linear preprocessing time. Orthogonally to that, we improve existing pruning techniques for the search by gathering more information from a single DFS-traversal of the graph. PReaCH-indices significantly outperform previous data structures with comparable preprocessing cost. Methods with faster queries need significantly more preprocessing time in particular for the most difficult instances

Push is Fast on Sparse Random Graphs

We consider the classical push broadcast process on a large class of sparse random multigraphs that includes random power law graphs and multigraphs. Our analysis shows that for every $\varepsilon>0$, whp $O(\log n)$ rounds are sufficient to inform all but an $\varepsilon$-fraction of the vertices. It is not hard to see that, e.g. for random power law graphs, the push process needs whp $n^{\Omega(1)}$ rounds to inform all vertices. Fountoulakis, Panagiotou and Sauerwald proved that for random graphs that have power law degree sequences with $\beta>3$, the push-pull protocol needs $\Omega(\log n)$ to inform all but $\varepsilon n$ vertices whp. Our result demonstrates that, for such random graphs, the pull mechanism does not (asymptotically) improve the running time. This is surprising as it is known that, on random power law graphs with $2<\beta<3$, push-pull is exponentially faster than pull

Scaling limit of a limit order book model via the regenerative characterization of L\'evy trees

We consider the following Markovian dynamic on point processes: at constant rate and with equal probability, either the rightmost atom of the current configuration is removed, or a new atom is added at a random distance from the rightmost atom. Interpreting atoms as limit buy orders, this process was introduced by Lakner et al. to model a one-sided limit order book. We consider this model in the regime where the total number of orders converges to a reflected Brownian motion, and complement the results of Lakner et al. by showing that, in the case where the mean displacement at which a new order is added is positive, the measure-valued process describing the whole limit order book converges to a simple functional of this reflected Brownian motion. Our results make it possible to derive useful and explicit approximations on various quantities of interest such as the depth or the total value of the book. Our approach leverages an unexpected connection with L\'evy trees. More precisely, the cornerstone of our approach is the regenerative characterization of L\'evy trees due to Weill, which provides an elegant proof strategy which we unfold.Comment: Accepted for publication in stochastic system

Self-adaptive Scouting---Autonomous Experimentation for Systems Biology

We introduce a new algorithm for autonomous experimentation. This algorithm uses evolution to drive exploration during scientific discovery. Population size and mutation strength are self-adaptive. The only variables remaining to be set are the limits and maximum resolution of the parameters in the experiment. In practice, these are determined by instrumentation. Aside from conducting physical experiments, the algorithm is a valuable tool for investigating simulation models of biological systems. We illustrate the operation of the algorithm on a model of HIV-immune system interaction. Finally, the difference between scouting and optimization is discussed