Social environment and reproductive interference affect reproductive success in the frog Rana latastei

Variation in the social environment produces selection on morphological and behavioral traits. It is less clear how the social environment generates variation in demography through behavioral mechanisms. Theory suggests that one aspect of social environment, relative abundance of heterospecifics, influences the intensity of reproductive interference and its demographic effects. These effects are countered by species recognition and female preferences. We studied the effects of social environment on reproductive success in replicated, mixed breeding populations of two ranid frogs, Rana latastei and Rana dalmatina, the former being of international conservation concern. We manipulated the social environment of female R. latastei experimentally by varying the relative abundance of potential conspecific and heterospecific sexual partners. We measured amplexus frequency and recorded the reproductive success of R. latastei females. When conspecific males were relatively uncommon, (1) the absolute and relative frequencies of conspecific amplexus decreased, indicating a breakdown of sexual isolation, (2) oviposition was less frequent, and (3) the percentage of viable embryos in deposited clutches decreased. R. latastei females in an environment of low relative conspecific abundance (1:5, R. Latastei:R. dalmatina) demonstrated 6.8% the reproductive success of females in an environment exclusively with conspecifics. We present a model for the dependence of conspecific amplexus on the social environment. We discuss several mechanisms that may influence reproduction by R. latastei, and we support conservation of the species' preferred habitat to reduce opportunities for reproductive interference that occur at shared breeding site

Integration of robotic surgery into routine practice and impacts on communication, collaboration, and decision making: A realist process evaluation protocol

Background: Robotic surgery offers many potential benefits for patients. While an increasing number of healthcare providers are purchasing surgical robots, there are reports that the technology is failing to be introduced into routine practice. Additionally, in robotic surgery, the surgeon is physically separated from the patient and the rest of the team, with the potential to negatively impact teamwork in the operating theatre. The aim of this study is to ascertain: how and under what circumstances robotic surgery is effectively introduced into routine practice; and how and under what circumstances robotic surgery impacts teamwork, communication and decision making, and subsequent patient outcomes. Methods and design: We will undertake a process evaluation alongside a randomised controlled trial comparing laparoscopic and robotic surgery for the curative treatment of rectal cancer. Realist evaluation provides an overall framework for the study. The study will be in three phases. In Phase I, grey literature will be reviewed to identify stakeholders' theories concerning how robotic surgery becomes embedded into surgical practice and its impacts. These theories will be refined and added to through interviews conducted across English hospitals that are using robotic surgery for rectal cancer resection with staff at different levels of the organisation, along with a review of documentation associated with the introduction of robotic surgery. In Phase II, a multi-site case study will be conducted across four English hospitals to test and refine the candidate theories. Data will be collected using multiple methods: the structured observation tool OTAS (Observational Teamwork Assessment for Surgery); video recordings of operations; ethnographic observation; and interviews. In Phase III, interviews will be conducted at the four case sites with staff representing a range of surgical disciplines, to assess the extent to which the results of Phase II are generalisable and to refine the resulting theories to reflect the experience of a broader range of surgical disciplines. The study will provide (i) guidance to healthcare organisations on factors likely to facilitate successful implementation and integration of robotic surgery, and (ii) guidance on how to ensure effective communication and teamwork when undertaking robotic surgery

Researching COVID to Enhance Recovery (RECOVER) Adult Study Protocol: Rationale, Objectives, and Design

IMPORTANCE: SARS-CoV-2 infection can result in ongoing, relapsing, or new symptoms or other health effects after the acute phase of infection; termed post-acute sequelae of SARS-CoV-2 infection (PASC), or long COVID. The characteristics, prevalence, trajectory and mechanisms of PASC are ill-defined. The objectives of the Researching COVID to Enhance Recovery (RECOVER) Multi-site Observational Study of PASC in Adults (RECOVER-Adult) are to: (1) characterize PASC prevalence; (2) characterize the symptoms, organ dysfunction, natural history, and distinct phenotypes of PASC; (3) identify demographic, social and clinical risk factors for PASC onset and recovery; and (4) define the biological mechanisms underlying PASC pathogenesis. METHODS: RECOVER-Adult is a combined prospective/retrospective cohort currently planned to enroll 14,880 adults aged ≥18 years. Eligible participants either must meet WHO criteria for suspected, probable, or confirmed infection; or must have evidence of no prior infection. Recruitment occurs at 86 sites in 33 U.S. states, Washington, DC and Puerto Rico, via facility- and community-based outreach. Participants complete quarterly questionnaires about symptoms, social determinants, vaccination status, and interim SARS-CoV-2 infections. In addition, participants contribute biospecimens and undergo physical and laboratory examinations at approximately 0, 90 and 180 days from infection or negative test date, and yearly thereafter. Some participants undergo additional testing based on specific criteria or random sampling. Patient representatives provide input on all study processes. The primary study outcome is onset of PASC, measured by signs and symptoms. A paradigm for identifying PASC cases will be defined and updated using supervised and unsupervised learning approaches with cross-validation. Logistic regression and proportional hazards regression will be conducted to investigate associations between risk factors, onset, and resolution of PASC symptoms. DISCUSSION: RECOVER-Adult is the first national, prospective, longitudinal cohort of PASC among US adults. Results of this study are intended to inform public health, spur clinical trials, and expand treatment options

Monitoring of species’ genetic diversity in Europe varies greatly and overlooks potential climate change impacts

Genetic monitoring of populations currently attracts interest in the context of the Convention on Biological Diversity but needs long-term planning and investments. However, genetic diversity has been largely neglected in biodiversity monitoring, and when addressed, it is treated separately, detached from other conservation issues, such as habitat alteration due to climate change. We report an accounting of efforts to monitor population genetic diversity in Europe (genetic monitoring effort, GME), the evaluation of which can help guide future capacity building and collaboration towards areas most in need of expanded monitoring. Overlaying GME with areas where the ranges of selected species of conservation interest approach current and future climate niche limits helps identify whether GME coincides with anticipated climate change effects on biodiversity. Our analysis suggests that country area, financial resources and conservation policy influence GME, high values of which only partially match species’ joint patterns of limits to suitable climatic conditions. Populations at trailing climatic niche margins probably hold genetic diversity that is important for adaptation to changing climate. Our results illuminate the need in Europe for expanded investment in genetic monitoring across climate gradients occupied by focal species, a need arguably greatest in southeastern European countries. This need could be met in part by expanding the European Union’s Birds and Habitats Directives to fully address the conservation and monitoring of genetic diversity

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Appendix E. Regression coefficients for square-root transformed species richness within several guilds of Amazonian understory birds.

Regression coefficients for square-root transformed species richness within several guilds of Amazonian understory birds

Common species determine richness patterns in biodiversity indicator taxa

Identification of spatial patterns of species diversity is a central problem in conservation biology, with the patterns having implications for the design of biodiversity monitoring programs. Nonetheless, there are few field data with which to examine whether variation in species richness represents consistent correlations among taxa in the richness of rare or common species, or the relative importance of common and rare species in establishing trends in species richness within taxa. We used field data on three higher taxa (birds, butterflies, vascular plants) to examine the correlation of species richness among taxa and the contribution of rare and common species to these correlations. We used graphical analysis to compare the contributions to spatial variation in species richness by widely-distributed ('common') and sparsely-distributed ('rare') species. The data came from the Swiss Biodiversity Monitoring Program, which is national in scope and based on a randomly located, regular sampling grid of 1 km2 cells, a scale relevant to real-world monitoring and management. We found that the correlation of species richness between groups of rare and common species varies among higher taxa, with butterflies exhibiting the highest levels of correlation. Species richness of common species is consistently positively correlated among these three taxa, but in no case exceeded 0.69. Spatial patterns of species richness are determined mainly by common species, in agreement with coarse resolution studies, but the contribution of rare species to variation in species richness varies within the study area in accordance with elevation. Our analyses suggest that spatial patterns in species richness can be described by sampling widely distributed species alone. Butterflies differ from the other two taxa in that the richness of red-listed species and other rare species is correlated with overall butterfly species richness. Monitoring of butterfly species richness may provide information on rare butterflies and on species richness of other taxa as well

Appendix B. Species occurrences and environmental variables.

Species occurrences and environmental variables