Strain-specific copy number variation in the intelectin locus on the 129 mouse chromosome 1

<p>Abstract</p> <p>Background</p> <p>C57BL/6J mice possess a single <it>intelectin (Itln) </it>gene on chromosome 1. The function of intelectins is not well understood, but roles have been postulated in insulin sensitivity, bacterial recognition, intestinal lactoferrin uptake and response to parasites and allergens. In contrast to C57BL/6J mice, there is evidence for expansion of the <it>Itln </it>locus in other strains and at least one additional mouse <it>Itln </it>gene product has been described. The aim of this study was to sequence and characterise the <it>Itln </it>locus in the 129S7 strain, to determine the nature of the chromosomal expansion and to inform possible future gene deletion strategies.</p> <p>Results</p> <p>Six 129S7 BAC clones were sequenced and assembled to generate 600 kbp of chromosomal sequence, including the entire <it>Itln </it>locus of approximately 500 kbp. The locus contained six distinct <it>Itln </it>genes, two <it>CD244 </it>genes and several <it>Itln</it>- and <it>CD244</it>-related pseudogenes. It was approximately 433 kbp larger than the corresponding C57BL/6J locus. The expansion of the <it>Itln </it>locus appears to have occurred through multiple duplications of a segment consisting of a full-length <it>Itln </it>gene, a <it>CD244 </it>(pseudo)gene and an <it>Itln </it>pseudogene fragment. Strong evidence for tissue-specific distribution of <it>Itln </it>variants was found, indicating that <it>Itln </it>duplication contributes more than a simple gene dosage effect.</p> <p>Conclusions</p> <p>We have characterised the <it>Itln </it>locus in 129S7 mice to reveal six <it>Itln </it>genes with distinct sequence and expression characteristics. Since C57BL/6J mice possess only a single <it>Itln </it>gene, this is likely to contribute to functional differences between C57BL/6J and other mouse strains.</p

The serpins Structure: function relationships

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Bovine intelectins: cDNA sequencing and expression in the bovine intestine

Intelectins (Itlns) are lectins with potential roles in innate immunity, capable of binding bacteria via galactofuranose residues. Itlns also function as intestinal receptors for the antimicrobial glycoprotein lactoferrin (Lf). Since Lf binds strongly to enterohemorrhagic Escherichia coli O157:H7 (EHEC), we aimed to determine the expression of Lf receptor in terminal rectum, the site of predilection of EHEC in cattle. We sequenced two bovine intelectins (Itln1 and Itln2) and showed that both were expressed in abomasum and rectum, but expression appeared minimal in the jejunum. There was significantly higher expression of Itln2 in terminal rather than proximal rectum. Lactoferrin was expressed in all samples examined. Thus, we have demonstrated two novel bovine Itlns and shown that they are expressed along with Lf in the gastrointestinal tract, where they may interact with microbial pathogens

Using genomic prediction to detect microevolutionary change of a quantitative trait

Detecting microevolutionary responses to natural selection by observing temporal changes in individual breeding values is challenging. The collection of suitable datasets can take many years and disentangling the contributions of the environment and genetics to phenotypic change is not trivial. Furthermore, pedigree-based methods of obtaining individual breeding values have known biases. Here, we apply a genomic prediction approach to estimate breeding values of adult weight in a 35-year dataset of Soay sheep (Ovis aries). Comparisons are made with a traditional pedigree-based approach. During the study period, adult body weight decreased, but the underlying genetic component of body weight increased, at a rate that is unlikely to be attributable to genetic drift. Thus cryptic microevolution of greater adult body weight has probably occurred. Genomic and pedigree-based approaches gave largely consistent results. Thus, using genomic prediction to study microevolution in wild populations can remove the requirement for pedigree data, potentially opening up new study systems for similar research

Encyclopedia of Rose Science

The Encyclopedia of Rose Science brings together a wealth of information on the rose, long treasured for its captivating perfumes and splendid colors. Now, more than ever, science plays a central place in the production of this flower at the center of one of the world's biggest floricultural industries. A team of internationally renowned experts has contributed scores of articles, from the history of rose cultivation to discoveries in rose genetics. For researchers and students, as well as commercial rose growers and breeders, the Encyclopedia of Rose Science is an invaluable reference. tp://books.elsevier.com/contentimages/bnr_mrws_sd.gif" alt="Reference Works on ScienceDirect" width="378" height="50" border="0"> The Encyclopedia of Rose Science is available online on ScienceDirect . The print edition price for this reference work does not include online access. For more information on pricing for access to the online edition, please review our Licensing Options . The richness and authority of Elsevier reference works is now lent valuable functionality and accessibility through the online launch of Elsevier Reference Works on ScienceDirect . Features: Extensive browsing and searching across subject, thematic, alphabetical, author and cited author indexes - as applicable to the work Basic and advanced search functionality within volumes, parts of volumes, or across the whole work Ability to build, save and re-run searches as well as combine saved searches Internal cross-referencing between articles in the work, plus dynamic linking to journal articles and abstract databases, making navigation flexible and easy All articles are available as full-text HTML files, and as PDF files that can be viewed, downloaded or printed out in their original print format A dedicated Reference Works navigation tab and homepage on ScienceDirect to enable easy linking from your OPAC or library website For more information about the Elsevier Reference Works on ScienceDirect Program, please visit: http://www.info.sciencedirect.com/reference_works