Bayesian Analysis of Simple Random Densities

A tractable nonparametric prior over densities is introduced which is closed under sampling and exhibits proper posterior asymptotics.Comment: 19 pages; 6 figure

Undulatory swimming in shear-thinning fluids: Experiments with C. elegans

The swimming behaviour of microorganisms can be strongly influenced by the rheology of their fluid environment. In this manuscript, we experimentally investigate the effects of shear-thinning viscosity on the swimming behaviour of an undulatory swimmer, the nematode Caenorhabditis elegans. Tracking methods are used to measure the swimmer's kinematic data (including propulsion speed) and velocity fields. We find that shear-thinning viscosity modifies the velocity fields produced by the swimming nematode but does not modify the nematode's speed and beating kinematics. Velocimetry data show significant enhancement in local vorticity and circulation and an increase in fluid velocity near the nematode's tail compared to Newtonian fluids of similar effective viscosity. These findings are compared to recent theoretical and numerical results

Predictive analysis of microarray data

Microarray gene expression data are analyzed by means of a Bayesian nonparametric model, with emphasis on prediction of future observables, yielding a method for selection of differentially expressed genes and a classifier

Thermodynamic and Dynamic Anomalies for Dumbbell Molecules Interacting with a Repulsive Ramp-Like Potential

Using collision driven discrete molecular dynamics (DMD), we investigate the thermodynamics and dynamics of systems of 500 dumbbell molecules interacting by a purely repulsive ramp-like discretized potential, consisting of $n$ steps of equal size. We compare the behavior of the two systems, with $n = 18$ and $n = 144$ steps. Each system exhibits both thermodynamic and dynamic anomalies, a density maximum and the translational and rotational mobilities show anomalous behavior. Starting with very dense systems and decreasing the density, both mobilities first increase, reache a maximum, then decrease, reache a minimum, and finally increase; this behavior is similar to the behavior of SPC/E water. The regions in the pressure-temperature plane of translational and rotational mobility anomalies depend strongly on $n$. The product of the translational diffusion coefficient and the orientational correlation time increases with temperature, in contrast with the behavior of most liquids

Structural anomalies for a three dimensional isotropic core-softened potential

Using molecular dynamics simulations we investigate the structure of a system of particles interacting through a continuous core-softened interparticle potential. We found for the translational order parameter, t, a local maximum at a density $\rho_{t-max}$ and a local minimum at $\rho_{t-min} > \rho_{t-max}$. Between $\rho_{t-max}$ and $\rho_{t-min}$, the $t$ parameter anomalously decreases upon pressure. For the orientational order parameter, $Q_6$, was observed a maximum at a density $\rho_{t-max}< \rho_{Qmax} < \rho_{t-min}$. For densities between $\rho_{Qmax}$ and $\rho_{t-min}$, both the translational (t) and orientational ($Q_6$) order parameters have anomalous behavior. We know that this system also exhibits density and diffusion anomaly. We found that the region in the pressure-temperature phase-diagram of the structural anomaly englobes the region of the diffusion anomaly that is larger than the region limited by the temperature of maximum density. This cascade of anomalies (structural, dynamic and thermodynamic) for our model has the same hierarchy of that one observed for the SPC/E water.Comment: 19 pages, 8 figure