216 research outputs found
Quasi-chemical theory with a soft cutoff
In view of the wide success of molecular quasi-chemical theory of liquids,
this paper develops the soft-cutoff version of that theory. This development
has important practical consequences in the common cases that the packing
contribution dominates the solvation free energy of realistically-modeled
molecules because treatment of hard-core interactions usually requires special
purpose simulation methods. In contrast, treatment of smooth repulsive
interactions is typically straightforward on the basis of widely available
software. This development also shows how fluids composed of molecules with
smooth repulsive interactions can be treated analogously to the molecular-field
theory of the hard-sphere fluid. In the treatment of liquid water,
quasi-chemical theory with soft-cutoff conditioning doesn't change the
fundamental convergence characteristics of the theory using hard-cutoff
conditioning. In fact, hard cutoffs are found here to work better than softer
ones.Comment: 5 pages, 2 figure
Direct observation of a hydrophobic bond in loop-closure of a capped (-OCH2CH2-)n oligomer in water
The small r variation of the probability density P(r) for end-to-end
separations of a -CH2CH3 capped (-OCH2CH2-)n oligomer in water is computed to
be closely similar to the CH4 ... CH4 potential of mean force under the same
circumstances. Since the aqueous solution CH4 ... CH4 potential of mean force
is the natural physical definition of a primitive hydrophobic bond, the present
result identifies an experimentally accessible circumstance for direct
observation of a hydrophobic bond which has not been observed previously
because of the low solubility of CH4 in water. The physical picture is that the
soluble chain molecule carries the capping groups into aqueous solution, and
permits them to find one another with reasonable frequency. Comparison with the
corresponding results without the solvent shows that hydration of the solute
oxygen atoms swells the chain molecule globule. This supports the view that the
chain molecule globule might have a secondary effect on the hydrophobic
interaction which is of first interest here. The volume of the chain molecule
globule is important for comparing the probabilities with and without solvent
because it characterizes the local concentration of capping groups. Study of
other capping groups to enable X-ray and neutron diffraction measurements of
P(r) is discussed.Comment: 4 pages, 3 figure
Balancing Local Order and Long-Ranged Interactions in the Molecular Theory of Liquid Water
A molecular theory of liquid water is identified and studied on the basis of
computer simulation of the TIP3P model of liquid water. This theory would be
exact for models of liquid water in which the intermolecular interactions
vanish outside a finite spatial range, and therefore provides a precise
analysis tool for investigating the effects of longer-ranged intermolecular
interactions. We show how local order can be introduced through quasi-chemical
theory. Long-ranged interactions are characterized generally by a conditional
distribution of binding energies, and this formulation is interpreted as a
regularization of the primitive statistical thermodynamic problem. These
binding-energy distributions for liquid water are observed to be unimodal. The
gaussian approximation proposed is remarkably successful in predicting the
Gibbs free energy and the molar entropy of liquid water, as judged by
comparison with numerically exact results. The remaining discrepancies are
subtle quantitative problems that do have significant consequences for the
thermodynamic properties that distinguish water from many other liquids. The
basic subtlety of liquid water is found then in the competition of several
effects which must be quantitatively balanced for realistic results.Comment: 8 pages, 6 figure
- …