Agriculture's Role in Greenhouse Gas Mitigation

Examines technical, economic, and policy trends. Explores efforts to encourage farmers to adopt new agricultural practices that reduce agricultural greenhouse gas emissions. Reviews biofuel options, and related policy implications

Characterization and expression analysis of Staphylococcus aureus pathogenicity island 3 - Implications for the evolution of staphylococcal pathogenicity islands

We describe the complete sequence of the 15.9-kb staphylococcal pathogenicity island 3 encoding staphylococcal enterotoxin serotypes B, K, and Q. The island, which meets the generally accepted definition of pathogenicity islands, contains 24 open reading frames potentially encoding proteins of more than 50 amino acids, including an apparently functional integrase. The element is bordered by two 17-bp direct repeats identical to those found flanking staphylococcal pathogenicity island 1. The island has extensive regions of homology to previously described pathogenicity islands, particularly staphylococcal pathogenicity islands 1 and bov. The expression of 22 of the 24 open reading frames contained on staphylococcal pathogenicity island 3 was detected either in vitro during growth in a laboratory medium or serum or in vivo in a rabbit model of toxic shock syndrome using DNA microarrays. The effect of oxygen tension on staphylococcal pathogenicity island 3 gene expression was also examined. By comparison with the known staphylococcal pathogenicity islands in the context of gene expression described here, we propose a model of pathogenicity island origin and evolution involving specialized transduction events and addition, deletion, or recombination of pathogenicity island "modules.

Interpretation of soil carbon and nitrogen dynamics in agricultural and afforested soils

Includes bibliographical references (pages 1627-1628).Interpretation of soil organic C (SOC) dynamics depends heavily on analytical methods and management systems studied. Comparison of data from long-term corn (Zea mays)-plot soils in Eastern North America showed mean residence times (MRTs) of SOC determined by 14C dating were 176 times those measured with 13C abundance following a 30-yr replacement of C3 by C4 plants on the same soils. However, MRTs of the two methods were related (r 2 = 0.71). Field 13C MRTs of SOC were also related (R 2 = 0.55 to 0.85) to those measured by 13CO2 evolution and curve fitting during laboratory incubation. The strong relations, but different MRTs, were interpreted to mean that the three methods sampled different parts of a SOC continuum. The SOC of all parts of this continuum must be affected by the same controls on SOC dynamics for this to occur. Methods for site selection, plant biomass, soil sampling and analysis were tested on agricultural, afforested-agriculture, and native forest sites to determine the controls on SOC dynamics. Soil-C changes after afforestation were −0.07 to 0.55 Mg C ha−1 yr−1 on deciduous sites and −0.85 to 0.58 Mg C ha−1 yr−1 under conifers. Soil N changes under afforestation ranged from −0.1 to 0.025 Mg N ha−1 yr−1 Ecosystem N accumulation was −0.09 to 0.08 Mg N ha−1 yr−1 Soil C and N sequestration but not plant biomass were related to soil Ca, Mg, and K contents. Comparative, independent assays of long-term plots provides information for concept testing and the confidence necessary for decision-makers determining C-cycle policies

Soil organic carbon pool changes following land-use conversions

Includes bibliographical references (pages 1131-1132).Carbon (C) can be sequestered in the mineral soil after the conversion of intensively cropped agricultural fields to more extensive land uses such as afforested and natural succession ecosystems. Three land-use treatments from the long-term ecological research site at Kellogg biological station in Michigan were compared with a nearby deciduous forest. Treatments included a conventionally tilled cropland, a former cropland afforested with poplar for 10 years and an old field (10 years) succession. We used soil aggregate and soil organic matter fractionation techniques to isolate C pools that (1) have a high potential for C storage and (2) accumulate C at a fast rate during afforestation or succession. These fractions could serve as sensitive indicators for the total change in C content due to land-use changes. At the mineral soil surface (0–7 cm), afforesting significantly increased soil aggregation to levels similar to native forest. However, surface soil (0–7 cm) C did not follow this trend: soil C of the native forest site (22.9 t C ha-1) was still significantly greater than the afforested (12.6 t C ha-1) and succession (15.4 t C ha-1) treatments. However, when the 0–50 cm soil layer was considered, no differences in total soil C were observed between the cropland and the poplar afforested system, while the successional system increased total soil C (0–50 cm) at a rate of 0.786 t C ha-1 yr-1. Afforested soils sequestered C mainly in the fine intra-aggregate particulate organic matter (POM) (53–250 μm), whereas the successional soils sequestered C preferentially in the mineral-associated organic matter and fine intra-aggregate POM C pools

Impact of Nitrogen Fertilization and Cropping System on Carbon Sequestration in Midwestern Mollisols

Growing interest in the potential for agricultural soils to provide a sink for atmospheric C has prompted studies of effects of management on soil organic carbon (SOC) sequestration. We analyzed the impact on SOC of four N fertilization rates (0–270 kg N ha−1) and four cropping systems: continuous corn (CC) (Zea mays L.); corn–soybean [Glycine max (L.) Merr.] (CS); corn–corn–oat–alfalfa (oat, Avena sativa L.; alfalfa, Medicago sativa L.) (CCOA), and corn–oat–alfalfa–alfalfa (COAA). Soils were sampled in 2002, Years 23 and 48 of the experiments located in northeast and north-central Iowa, respectively. The experiments were conducted using a replicated split-plot design under conventional tillage. A native prairie was sampled to provide a reference (for one site only). Cropping systems that contained alfalfa had the highest SOC stocks, whereas the CS system generally had the lowest SOC stocks. Concentrations of SOC increased significantly between 1990 and 2002 in only two of the nine systems for which historical data were available, the fertilized CC and COAA systems at one site. Soil quality indices such as particulate organic carbon (POC) were influenced by cropping system, with CS \u3c CC \u3c CCOA. In the native prairie, SOC, POC, and resistant C concentrations were 2.8, 2.6, and 3.9 times, respectively, the highest values in cropped soil, indicating that cultivated soils had not recovered to precultivation conditions. Although corn yields increased with N additions, N fertilization increased SOC stocks only in the CC system at one site. Considering the C cost for N fertilizer production, N fertilization generally had a net negative effect on C sequestration

Genomic-scale Analysis of Bacterial Gene and Protein Expression in the Host

DNA microarrays and proteomics are used to study bacterial gene and protein expression during infections

Global change pressures on soils from land use and management

Soils are subject to varying degrees of direct or indirect human disturbance, constituting a major global change driver. Factoring out natural from direct and indirect human influence is not always straightforward, but some human activities have clear impacts. These include land-use change, land management and land degradation (erosion, compaction, sealing and salinization). The intensity of land use also exerts a great impact on soils, and soils are also subject to indirect impacts arising from human activity, such as acid deposition (sulphur and nitrogen) and heavy metal pollution. In this critical review, we report the state-of-the-art understanding of these global change pressures on soils, identify knowledge gaps and research challenges and highlight actions and policies to minimize adverse environmental impacts arising from these global change drivers. Soils are central to considerations of what constitutes sustainable intensification. Therefore, ensuring that vulnerable and high environmental value soils are considered when protecting important habitats and ecosystems, will help to reduce the pressure on land from global change drivers. To ensure that soils are protected as part of wider environmental efforts, a global soil resilience programme should be considered, to monitor, recover or sustain soil fertility and function, and to enhance the ecosystem services provided by soils. Soils cannot, and should not, be considered in isolation of the ecosystems that they underpin and vice versa. The role of soils in supporting ecosystems and natural capital needs greater recognition. The lasting legacy of the International Year of Soils in 2015 should be to put soils at the centre of policy supporting environmental protection and sustainable development

Long-term ecological research on Colorado Shortgrass Steppe

The SGS-LTER research site was established in 1980 by researchers at Colorado State University as part of a network of long-term research sites within the US LTER Network, supported by the National Science Foundation. Scientists within the Natural Resource Ecology Lab, Department of Forest and Rangeland Stewardship, Department of Soil and Crop Sciences, and Biology Department at CSU, California State Fullerton, USDA Agricultural Research Service, University of Northern Colorado, and the University of Wyoming, among others, have contributed to our understanding of the structure and functions of the shortgrass steppe and other diverse ecosystems across the network while maintaining a common mission and sharing expertise, data and infrastructure.Poster presented at the LTER All Scientists Meeting held in Estes Park, CO on September 10-13, 2012

Land use change from C3 grassland to C4 <em>Miscanthus</em>: effects on soil carbon content and estimated mitigation benefit after six years

To date, most Miscanthus trials and commercial fields have been planted on arable land. Energy crops will need to be grown more on lower grade lands unsuitable for arable crops. Grasslands represent a major land resource for energy crops. In grasslands, where soil organic carbon (SOC) levels can be high, there have been concerns that the carbon mitigation benefits of bioenergy from Miscanthus could be offset by losses in SOC associated with land use change. At a site in Wales (UK), we quantified the relatively short-term impacts (6 years) of four novel Miscanthus hybrids and Miscanthus × giganteus on SOC in improved grassland. After 6 years, using stable carbon isotope ratios (13C/12C), the amount of Miscanthus derived C (C4) in total SOC was considerable (ca. 12%) and positively correlated to belowground biomass of different hybrids. Nevertheless, significant changes in SOC stocks (0–30 cm) were not detected as C4 Miscanthus carbon replaced the initial C3 grassland carbon; however, initial SOC decreased more in the presence of higher belowground biomass. We ascribed this apparently contradictory result to the rhizosphere priming effect triggered by easily available C sources. Observed changes in SOC partitioning were modelled using the RothC soil carbon turnover model and projected for 20 years showing that there is no significant change in SOC throughout the anticipated life of a Miscanthus crop. We interpret our observations to mean that the new labile C from Miscanthus has replaced the labile C from the grassland and, therefore, planting Miscanthus causes an insignificant change in soil organic carbon. The overall C mitigation benefit is therefore not decreased by depletion of soil C and is due to substitution of fossil fuel by the aboveground biomass, in this instance 73–108 Mg C ha−1 for the lowest and highest yielding hybrids, respectively, after 6 years