Additional file 5: Table S4. of X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species

GO categories that are enriched in genes with high impact variants. (XLSX 48 kb

Additional file 6: Figure S2. of X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species

Dot plots of location of one-to-one orthologues in the 24 chromosomes of X. couchianus and X. maculatus. (PDF 110 kb

ColguoGenomePaper2016

This file contains 1) files for divergence time estimation, 2) Sequence matrices used for phylogenetic analysis, 3) Files for the BPP analyses, and 4) 21 mammal orthologous alignment

Lp_ALLOPS_newick

Newick tree file for large opsin dataset phylogen

Lp_ALLOPS

Phylip file of all sequences used in large opsin datase

LpONLY.phy

Phylip formatted file of Limulus opsin ONLY dataset

Lp_phyloseq_database

Sequence IDs, information on data source (e.g. genbank accession number) and species identities for sequences used in making the large opsin phylogeny

Oxytricha trifallax macronuclear IDBA assembly

Contigs in gzipped fasta format

Oxytricha trifallax macronuclear PE-Assembler/SSAKE assembly

Contigs in gzipped fasta format

Oxytricha trifallax macronuclear PCAP 2.1.8 assembly

Oxytricha trifallax macronuclear PCAP 2.1.8 assembl