Impact of the earthworm Lumbricus terrestris (L.) on As, Cu, Pb and Zn mobility and speciation in contaminated soils

To assess the risks that contaminated soils pose to the environment properly a greater understanding of how soil biota influence the mobility of metal(loid)s in soils is required. Lumbricus terrestris L. were incubated in three soils contaminated with As, Cu, Pb and Zn. The concentration and speciation of metal(loid)s in pore waters and the mobility and partitioning in casts were compared with earthworm-free soil. Generally the concentrations of water extractable metal(loid)s in earthworm casts were greater than in earthworm-free soil. The impact of the earthworms on concentration and speciation in pore waters was soil and metal specific and could be explained either by earthworm induced changes in soil pH or soluble organic carbon. The mobilisation of metal(loid)s in the environment by earthworm activity may allow for leaching or uptake into biota

Impacts of epigeic, anecic and endogeic earthworms on metal and metalloid mobility and availability

The introduction of earthworms into soils contaminated with metals and metalloids has been suggested to aid restoration practices. Eisenia veneta (epigeic), Lumbricus terrestris (anecic) and Allolobophora chlorotica (endogeic) earthworms were cultivated in columns containing 900 g soil with 1130, 345, 113 and 131 mg kg1 of As, Cu, Pb and Zn, respectively, for up to 112 days, in parallel with earthworm-free columns. Leachate was produced by pouring water on the soil surface to saturate the soil and generate downflow. Ryegrass was grown on the top of columns to assess metal uptake into biota. Different ecological groups affected metals in the same way by increasing concentrations and free ion activities in leachate, but anecic L. terrestris had the greatest effect by increasing leachate concentrations of As by 267%, Cu by 393%, Pb by 190%, and Zn by 429% compared to earthworm-free columns. Ryegrass grown in earthworm-bearing soil accumulated more metal and the soil microbial community exhibited greater stress. Results are consistent with earthworm enhanced degradation of organic matter leading to release of organically bound elements. The degradation of organic matter also releases organic acids which decrease the soil pH. The earthworms do not appear to carry out a unique process, but increase the rate of a process that is already occurring. The impact of earthworms on metal mobility and availability should therefore be considered when inoculating earthworms into contaminated soils as new pathways to receptors may be created or the flow of metals and metalloids to receptors may be elevated

Widespread Antisense Transcription in Escherichia coli

The vast majority of annotated transcripts in bacteria are mRNAs. Here we identify ~1,000 antisense transcripts in the model bacterium Escherichia coli. We propose that these transcripts are generated by promiscuous transcription initiation within genes and that many of them regulate expression of the overlapping gene

Limitations on the role of the hyporheic zone in chromium natural attenuation in a contaminated urban stream

The urban hyporheic zone may offer natural attenuation potential for contaminants. This potential is contaminant-specific and may be spatially and temporally variable. The aim of this study was the assessment of the natural attenuation potential of the hyporheic zone of an urban stream receiving hexavalent chromium (Cr)-rich effluents from the historical land disposal of chromite ore processing residue (COPR) in Glasgow, Scotland. The evidence based approach involved the use of a network of multilevel piezometers for best capturing potential anoxic field conditions and fine-scale spatial gradients in solute concentrations of surface water and porewater. In-situ porewater sampling was integrated with sediment sampling and reach-scale monitoring of stream water quality. The results show a sharp decrease of total dissolved (filtered <0.45 μm) Cr concentrations at the surface water – sediment boundary in all profiles, from Cr mean values of 1100 μg l−1 in surface water to 5 μg l−1 in porewater. Chromium speciation analysis indicates that no Cr(VI) was detectable in the neutral pH, moderately reducing porewater, while it was the dominant species in surface water. Evidence of historical COPR detrital grains contributed to the total Cr concentrations (size fraction <150 μm) up to 8800 mg kg−1 in the streambed sediment. The abundance in the porewater of Fe (mean value = 1700 μg l−1), mainly as Fe(II), a natural electron donor for Cr(VI) reduction to Cr(III), indicates a high natural attenuation potential of the hyporheic zone for downwelling dissolved Cr, through Cr(VI) reduction to Cr(III) and the formation of Cr(III) solids of low solubility. Authigenic Cr-rich rims on particles also documented active Cr precipitation from solution in the fine sediments. Large short-term changes of stream stage and stream water composition were not reflected in the hyporheic conservative (chloride) and reactive solute composition. This result indicates only limited surface water infiltration and suggests that small advective exchange might limit the effectiveness of the hyporheic zone for enhancing Cr surface water quality at the reach-scale. This is supported by further evidence from preliminary surface water quality synoptic sampling which shows only moderate to low downstream decrease in surface water Cr concentrations. The surface water investigation needs to be supported by combined water quality-flow monitoring and to be extended to a wider range of temporal and spatial scales to corroborate the reach-scale findings

The use of high aspect ratio photoresist (SU-8) for super-hydrophobic pattern prototyping

In this work we present a reliable technique for the production of large areas of high aspect-ratio patterns and describe their use as model super-hydrophobic systems. The high thickness and straight sidewalls possible with SU-8 were used to generate dense patterns of small pillars. These photoresist patterns could be used directly, without the need for micromoulding. A method is given allowing resist thickness to be varied over a wide range and a bottom antireflective layer was used to simplify patterning on reflective substrates. This patterning technique allows rapid testing of wetting theories, as pattern size and depth can be varied simply and samples can be produced in sufficient numbers for laboratory use. We show how the static contact angle of water varies with pattern height for one sample-pattern and how static and dynamic contact angles vary with dimension using high aspect-ratio patterns