LIMEcraft: Handcrafted superpixel selection and inspection for Visual eXplanations

The increased interest in deep learning applications, and their hard-to-detect biases result in the need to validate and explain complex models. However, current explanation methods are limited as far as both the explanation of the reasoning process and prediction results are concerned. They usually only show the location in the image that was important for model prediction. The lack of possibility to interact with explanations makes it difficult to verify and understand exactly how the model works. This creates a significant risk when using the model. The risk is compounded by the fact that explanations do not take into account the semantic meaning of the explained objects. To escape from the trap of static and meaningless explanations, we propose a tool and a process called LIMEcraft. LIMEcraft enhances the process of explanation by allowing a user to interactively select semantically consistent areas and thoroughly examine the prediction for the image instance in case of many image features. Experiments on several models show that our tool improves model safety by inspecting model fairness for image pieces that may indicate model bias. The code is available at: http://github.com/MI2DataLab/LIMEcraf

Hospital Length of Stay Prediction Based on Multi-modal Data towards Trustworthy Human-AI Collaboration in Radiomics

To what extent can the patient's length of stay in a hospital be predicted using only an X-ray image? We answer this question by comparing the performance of machine learning survival models on a novel multi-modal dataset created from 1235 images with textual radiology reports annotated by humans. Although black-box models predict better on average than interpretable ones, like Cox proportional hazards, they are not inherently understandable. To overcome this trust issue, we introduce time-dependent model explanations into the human-AI decision making process. Explaining models built on both: human-annotated and algorithm-extracted radiomics features provides valuable insights for physicians working in a hospital. We believe the presented approach to be general and widely applicable to other time-to-event medical use cases. For reproducibility, we open-source code and the TLOS dataset at https://github.com/mi2datalab/xlungs-trustworthy-los-prediction.Comment: Accepted at International Conference on Artificial Intelligence in Medicine (AIME 2023

Towards Evaluating Explanations of Vision Transformers for Medical Imaging

As deep learning models increasingly find applications in critical domains such as medical imaging, the need for transparent and trustworthy decision-making becomes paramount. Many explainability methods provide insights into how these models make predictions by attributing importance to input features. As Vision Transformer (ViT) becomes a promising alternative to convolutional neural networks for image classification, its interpretability remains an open research question. This paper investigates the performance of various interpretation methods on a ViT applied to classify chest X-ray images. We introduce the notion of evaluating faithfulness, sensitivity, and complexity of ViT explanations. The obtained results indicate that Layerwise relevance propagation for transformers outperforms Local interpretable model-agnostic explanations and Attention visualization, providing a more accurate and reliable representation of what a ViT has actually learned. Our findings provide insights into the applicability of ViT explanations in medical imaging and highlight the importance of using appropriate evaluation criteria for comparing them.Comment: Accepted by XAI4CV Workshop at CVPR 202

Multi-task learning for classification, segmentation, reconstruction, and detection on chest CT scans

Lung cancer and covid-19 have one of the highest morbidity and mortality rates in the world. For physicians, the identification of lesions is difficult in the early stages of the disease and time-consuming. Therefore, multi-task learning is an approach to extracting important features, such as lesions, from small amounts of medical data because it learns to generalize better. We propose a novel multi-task framework for classification, segmentation, reconstruction, and detection. To the best of our knowledge, we are the first ones who added detection to the multi-task solution. Additionally, we checked the possibility of using two different backbones and different loss functions in the segmentation task.Comment: presented at the Polish Conference on Artificial Intelligence (PP-RAI), 202

SurvSHAP(t): Time-dependent explanations of machine learning survival models

Machine and deep learning survival models demonstrate similar or even improved time-to-event prediction capabilities compared to classical statistical learning methods yet are too complex to be interpreted by humans. Several model-agnostic explanations are available to overcome this issue; however, none directly explain the survival function prediction. In this paper, we introduce SurvSHAP(t), the first time-dependent explanation that allows for interpreting survival black-box models. It is based on SHapley Additive exPlanations with solid theoretical foundations and a broad adoption among machine learning practitioners. The proposed methods aim to enhance precision diagnostics and support domain experts in making decisions. Experiments on synthetic and medical data confirm that SurvSHAP(t) can detect variables with a time-dependent effect, and its aggregation is a better determinant of the importance of variables for a prediction than SurvLIME. SurvSHAP(t) is model-agnostic and can be applied to all models with functional output. We provide an accessible implementation of time-dependent explanations in Python at http://github.com/MI2DataLab/survshap

intsvy: An R Package for Analyzing International Large-Scale Assessment Data

This paper introduces intsvy, an R package for working with international assessment data (e.g., PISA, TIMSS, PIRLS). The package includes functions for importing data, performing data analysis, and visualizing results. The paper describes the underlying methodology and provides real data examples. Tools for importing data allow useRs to select variables from student, home, school, and teacher survey instruments as well as for specific countries. Data analysis functions take into account the complex sample design (with replicate weights) and rotated test forms (with plausible values of achievement scores) in the calculation of point estimates and standard errors of means, standard deviations, regression coefficients, correlation coefficients, and frequency tables. Visualization tools present data aggregates in standardized graphical form