Evolutionary genomics of a cold-adapted diatom: Fragilariopsis cylindrus

The Southern Ocean houses a diverse and productive community of organisms1, 2. Unicellular eukaryotic diatoms are the main primary producers in this environment, where photosynthesis is limited by low concentrations of dissolved iron and large seasonal fluctuations in light, temperature and the extent of sea ice3, 4, 5, 6, 7. How diatoms have adapted to this extreme environment is largely unknown. Here we present insights into the genome evolution of a cold-adapted diatom from the Southern Ocean, Fragilariopsis cylindrus8, 9, based on a comparison with temperate diatoms. We find that approximately 24.7 per cent of the diploid F. cylindrus genome consists of genetic loci with alleles that are highly divergent (15.1 megabases of the total genome size of 61.1 megabases). These divergent alleles were differentially expressed across environmental conditions, including darkness, low iron, freezing, elevated temperature and increased CO2. Alleles with the largest ratio of non-synonymous to synonymous nucleotide substitutions also show the most pronounced condition-dependent expression, suggesting a correlation between diversifying selection and allelic differentiation. Divergent alleles may be involved in adaptation to environmental fluctuations in the Southern Ocean

Metal–organic complexation in the marine environment

We discuss the voltammetric methods that are used to assess metal–organic complexation in seawater. These consist of titration methods using anodic stripping voltammetry (ASV) and cathodic stripping voltammetry competitive ligand experiments (CSV-CLE). These approaches and a kinetic approach using CSV-CLE give similar information on the amount of excess ligand to metal in a sample and the conditional metal ligand stability constant for the excess ligand bound to the metal. CSV-CLE data using different ligands to measure Fe(III) organic complexes are similar. All these methods give conditional stability constants for which the side reaction coefficient for the metal can be corrected but not that for the ligand. Another approach, pseudovoltammetry, provides information on the actual metal–ligand complex(es) in a sample by doing ASV experiments where the deposition potential is varied more negatively in order to destroy the metal–ligand complex. This latter approach gives concentration information on each actual ligand bound to the metal as well as the thermodynamic stability constant of each complex in solution when compared to known metal–ligand complexes. In this case the side reaction coefficients for the metal and ligand are corrected. Thus, this method may not give identical information to the titration methods because the excess ligand in the sample may not be identical to some of the actual ligands binding the metal in the sample

Resupply of mesopelagic dissolved iron controlled by particulate iron composition

The dissolved iron supply controls half of the oceans’ primary productivity. Resupply by the remineralization of sinking particles, and subsequent vertical mixing, largely sustains this productivity. However, our understanding of the drivers of dissolved iron resupply, and their influence on its vertical distribution across the oceans, is still limited due to sparse observations. There is a lack of empirical evidence as to what controls the subsurface iron remineralization due to difficulties in studying mesopelagic biogeochemistry. Here we present estimates of particulate transformations to dissolved iron, concurrent oxygen consumption and iron-binding ligand replenishment based on in situ mesopelagic experiments. Dissolved iron regeneration efficiencies (that is, replenishment over oxygen consumption) were 10- to 100-fold higher in low-dust subantarctic waters relative to higher-dust Mediterranean sites. Regeneration efficiencies are heavily influenced by particle composition. Their make-up dictates ligand release, controls scavenging, modulates ballasting and may lead to the differential remineralization of biogenic versus lithogenic iron. At high-dust sites, these processes together increase the iron remineralization length scale. Modelling reveals that in oceanic regions near deserts, enhanced lithogenic fluxes deepen the ferricline, which alter the vertical patterns of dissolved iron replenishment, and set its redistribution at the global scale. Such wide-ranging regeneration efficiencies drive different vertical patterns in dissolved iron replenishment across oceanic provinces

H2S events in the Peruvian oxygen minimum zone facilitate enhanced dissolved Fe concentrations

Dissolved iron (DFe) concentrations in oxygen minimum zones (OMZs) of Eastern Boundary Upwelling Systems are enhanced as a result of high supply rates from anoxic sediments. However, pronounced variations in DFe concentrations in anoxic coastal waters of the Peruvian OMZ indicate that there are factors in addition to dissolved oxygen concentrations (O2) that control Fe cycling. Our study demonstrates that sediment-derived reduced Fe (Fe(II)) forms the main DFe fraction in the anoxic/euxinic water column off Peru, which is responsible for DFe accumulations of up to 200 nmol L-1. Lowest DFe values were observed in anoxic shelf waters in the presence of nitrate and nitrite. This reflects oxidation of sediment-sourced Fe(II) associated with nitrate/nitrite reduction and subsequent removal as particulate Fe(III) oxyhydroxides. Unexpectedly, the highest DFe levels were observed in waters with elevated concentrations of hydrogen sulfide (up to 4 µmol L-1) and correspondingly depleted nitrate/nitrite concentrations (<0.18 µmol L-1). Under these conditions, Fe removal was reduced through stabilization of Fe(II) as aqueous iron sulfide (FeSaqu) which comprises complexes (e.g., FeSH+) and clusters (e.g., Fe2S2|4H2O). Sulfidic events on the Peruvian shelf consequently enhance Fe availability, and may increase in frequency in future due to projected expansion and intensification of OMZs

Atmospheric and marine controls on aerosol iron solubility in seawater

The fraction of atmospherically deposited iron which dissolves in seawater, or becomes available to phytoplankton for growth, is a key determinant of primary productivity in many open ocean regions. As such this parameter plays an important part in the global oceanic cycles of iron and carbon, and yet the factors that control iron dissolution from aerosol are very poorly understood. In this manuscript we seek to synthesise the available knowledge of these factors, which operate in the atmosphere and in seawater. A conceptual model of the overall aerosol iron solubility is presented, in which we liken the various controls on iron solubility to sets of parallel electrical resistors. We also discuss experimental methods for the determination of iron solubility and make recommendations for future studies in this area

Short residence time for iron in surface seawater impacted by atmospheric dry deposition from Saharan dust events

Measurements of dissolved (DFe) and total iron (TFe) in the upper water column are presented from the German SOLAS (Surface Ocean ‐ Lower Atmosphere Study) cruise (M55), along a west to east transect at 10°N, in the equatorial Atlantic in October/November 2002. Aerosol samples were collected simultaneously during this time and are used to estimate an iron flux to the surface waters. Resulting flux estimates combined with iron inventories in the near surface waters reveal extremely short fractional mean residence times (6–62 days) for total (dissolved and particulate) iron in waters directly under the path of Saharan dust plumes. These results suggest that individual dust storms can supply a significant amount of the present iron upper water column inventory which is subsequent rapidly removed by aggregation and sinking

Effects of iron surface adsorption and sample handling on iron solubility measurements

Seawater samples from two separate cruises in the Southern Ocean (ANTXXI/3 (EIFeX) and ANTXXIII/9) were collected for measurements of iron solubility by 55Fe addition. For both sets of samples, a significant loss of the dissolved portion of the added Fe was observed during the 72 hour duration of each Fe solubility measurement incubation. The decrease in dissolved Fe was related to Fe precipitation and adsorption onto bottle walls. The dissolved Fe data can be successfully modeled assuming that two colloidal Fe species (organically complexed Fe and inorganic Fe) were quickly formed following the addition of dissolved Fe(III) to the seawater. Model results indicate that Fe dissociated from weak organic complexes was the main contributor to wall sorption during the first 6 h following Fe addition, and that most of the Fe deposited after the first 6 h arose from the dissociation of colloidal inorganic species. Effects of sample freezing on Fe solubility measurements are also discussed

Redox processes impacting the flux of iron(II) from shelf sediments to the OMZ along the Peruvian shelf

Iron (Fe) is a limiting nutrient in many regions of the open ocean and can also play a key role in controlling primary productivity in Eastern Boundary Upwelling Systems (EBUS). In EBUS regions, where intense oxygen minimum zones (OMZs) contact the continental shelf, significant iron inputs can result from the supply of Fe(II) from reducing sediments. How much of this iron makes it to the photic zone depends on physical processes mixing over different time scales (minutes to decades) and the kinetics of redox and complexation processes impacting the biogeochemical cycling of iron. In this work we examine the controls on Fe(II) release from shelf sediments across the Peruvian OMZ by measuring Fe(II) and hydrogen peroxide (H2O2) in the water column and benthic boundary layer (BBL) and applying a simple 1D mixing model, with either 1 or 2 layers, where the flux of Fe(II) to the water column is treated as analogous to radon, that the decay rate is constant within the mixing layer. Our modeling approach then allows us to compare our estimated decay rate against published oxidation rates for specific oxidants of Fe(II) in OMZ waters and check the validity of our approach. Our data indicate that throughout the OMZ, Fe(II) decay rates may be partially influenced by H2O2, but it is most likely that nitrate-dependent anaerobic Fe(II) oxidizing (NDFO) bacteria are the main oxidizers. In the secondary nitrite maxima (SNM), abiotic NO2– or biotic-mediated processes may also be important. This work highlights the importance and uses of redox species in understanding biogeochemical cycles in the ocean.</p