Identification of the orphan gene Prod 1 in basal and other salamander families.

The urodele amphibians (salamanders) are the only adult tetrapods able to regenerate the limb. It is unclear if this is an ancestral property that is retained in salamanders but lost in other tetrapods or if it evolved in salamanders. The three-finger protein Prod 1 is implicated in the mechanism of newt limb regeneration, and no orthologs have been found in other vertebrates, thus providing evidence for the second viewpoint. It has also been suggested that this protein could play a role in salamander-specific aspects of limb development. There are ten families of extant salamanders, and Prod 1 has only been identified in two of them to date. It is important to determine if it is present in other families and, particularly, the basal group of two families which diverged approximately 200 MYA

Morphological image analysis for classification of gastrointestinal tissues using optical coherence tomography

Computer-aided diagnosis of ophthalmic diseases using optical coherence tomography (OCT) relies on the extraction of thickness and size measures from the OCT images, but such defined layers are usually not observed in emerging OCT applications aimed at "optical biopsy" such as pulmonology or gastroenterology. Mathematical methods such as Principal Component Analysis (PCA) or textural analyses including both spatial textural analysis derived from the two-dimensional discrete Fourier transform (DFT) and statistical texture analysis obtained independently from center-symmetric auto-correlation (CSAC) and spatial grey-level dependency matrices (SGLDM), as well as, quantitative measurements of the attenuation coefficient have been previously proposed to overcome this problem. We recently proposed an alternative approach consisting of a region segmentation according to the intensity variation along the vertical axis and a pure statistical technology for feature quantification. OCT images were first segmented in the axial direction in an automated manner according to intensity. Afterwards, a morphological analysis of the segmented OCT images was employed for quantifying the features that served for tissue classification. In this study, a PCA processing of the extracted features is accomplished to combine their discriminative power in a lower number of dimensions. Ready discrimination of gastrointestinal surgical specimens is attained demonstrating that the approach further surpasses the algorithms previously reported and is feasible for tissue classification in the clinical setting

SO(p,q)-Higgs bundles and Higher Teichmuller components

Some connected components of a moduli space are mundane in the sense that they are distinguished only by obvious topological invariants or have no special characteristics. Others are more alluring and unusual either because they are not detected by primary invariants, or because they have special geometric significance, or both. In this paper we describe new examples of such 'exotic' components in moduli spaces of of SO(p, q)-Higgs bundles on closed Riemann surfaces or, equivalently, moduli spaces of surface group representations into the Lie group SO(p, q). Furthermore, we discuss how these exotic components are related to the notion of positive Anosov representations recently developed by Guichard and Wienhard. We also provide a complete count of the connected components of these moduli spaces (except for SO(2, q), with q >= 4)

Conservative and disruptive modes of adolescent change in human brain functional connectivity

Adolescent changes in human brain function are not entirely understood. Here, we used multiecho functional MRI (fMRI) to measure developmental change in functional connectivity (FC) of resting-state oscillations between pairs of 330 cortical regions and 16 subcortical regions in 298 healthy adolescents scanned 520 times. Participants were aged 14 to 26 y and were scanned on 1 to 3 occasions at least 6 mo apart. We found 2 distinct modes of age-related change in FC: “conservative” and “disruptive.” Conservative development was characteristic of primary cortex, which was strongly connected at 14 y and became even more connected in the period from 14 to 26 y. Disruptive development was characteristic of association cortex and subcortical regions, where connectivity was remodeled: connections that were weak at 14 y became stronger during adolescence, and connections that were strong at 14 y became weaker. These modes of development were quantified using the maturational index (MI), estimated as Spearman’s correlation between edgewise baseline FC (at 14 y, FC14) and adolescent change in FC (ΔFC14−26), at each region. Disruptive systems (with negative MI) were activated by social cognition and autobiographical memory tasks in prior fMRI data and significantly colocated with prior maps of aerobic glycolysis (AG), AG-related gene expression, postnatal cortical surface expansion, and adolescent shrinkage of cortical thickness. The presence of these 2 modes of development was robust to numerous sensitivity analyses. We conclude that human brain organization is disrupted during adolescence by remodeling of FC between association cortical and subcortical areas

Higgs bundles for the non-compact dual of the special orthogonal group

Higgs bundles over a closed orientable surface can be defined for any real reductive Lie group . In this paper we examine the case . We describe a rigidity phenomenon encountered in the case of maximal Toledo invariant. Using this and Morse theory in the moduli space of Higgs bundles, we show that the moduli space is connected in this maximal Toledo case. The Morse theory also allows us to show connectedness when the Toledo invariant is zero. The correspondence between Higgs bundles and surface group representations thus allows us to count the connected components with zero and maximal Toledo invariant in the moduli space of representations of the fundamental group of the surface in SO* (2n)

Mechanism of Action of Secreted Newt Anterior Gradient Protein

Anterior gradient (AG) proteins have a thioredoxin fold and are targeted to the secretory pathway where they may act in the ER, as well as after secretion into the extracellular space. A newt member of the family (nAG) was previously identified as interacting with the GPI-anchored salamander-specific three-finger protein called Prod1. Expression of nAG has been implicated in the nerve dependence of limb regeneration in salamanders, and nAG acted as a growth factor for cultured newt limb blastemal (progenitor) cells, but the mechanism of action was not understood. Here we show that addition of a peptide antibody to Prod1 specifically inhibit the proliferation of blastema cells, suggesting that Prod1 acts as a cell surface receptor for secreted nAG, leading to S phase entry. Mutation of the single cysteine residue in the canonical active site of nAG to alanine or serine leads to protein degradation, but addition of residues at the C terminus stabilises the secreted protein. The mutation of the cysteine residue led to no detectable activity on S phase entry in cultured newt limb blastemal cells. In addition, our phylogenetic analyses have identified a new Caudata AG protein called AG4. A comparison of the AG proteins in a cell culture assay indicates that nAG secretion is significantly higher than AGR2 or AG4, suggesting that this property may vary in different members of the family

Examining the relationship between altered brain functional connectome and disinhibition across 33 impulsive and compulsive behaviours

Impulsive and compulsive problem behaviours are associated with a variety of mental disorders. Latent phenotyping indicates the expression of impulsive and compulsive problem behaviours is predominantly governed by a transdiagnostic 'disinhibition' phenotype. In a cohort of 117 individuals, recruited as part of the Neuroscience in Psychiatry Network (NSPN), we examined how brain functional connectome and network properties relate to disinhibition. Reduced functional connectivity within a subnetwork of frontal (especially right inferior frontal gyrus), occipital and parietal regions was linked to disinhibition. Findings provide insights into neurobiological pathways underlying the emergence of impulsive and compulsive disorders

Gauge invariant definition of the jet quenching parameter

In the framework of Soft-Collinear Effective Theory, the jet quenching parameter, $\hat{q}$, has been evaluated by adding the effect of Glauber gluon interactions to the propagation of a highly-energetic collinear parton in a medium. The result, which holds in covariant gauges, has been expressed in terms of the expectation value of two Wilson lines stretching along the direction of the four-momentum of the parton. In this paper, we show how that expression can be generalized to an arbitrary gauge by the addition of transverse Wilson lines. The transverse Wilson lines are explicitly computed by resumming interactions of the parton with Glauber gluons that appear only in non-covariant gauges. As an application of our result, we discuss the contribution to $\hat{q}$ coming from transverse momenta of order $g^2T$ in a medium that is a weakly-coupled quark-gluon plasma.Comment: 31 pages, 7 figures; journal versio

Extraordinary absorption of sound in porous lamella-crystals

We present the design of a structured material supporting complete absorption of sound with a broadband response and functional for any direction of incident radiation. The structure which is fabricated out of porous lamellas is arranged into a low-density crystal and backed by a reflecting support. Experimental measurements show that strong all-angle sound absorption with almost zero reflectance takes place for a frequency range exceeding two octaves. We demonstrate that lowering the crystal filling fraction increases the wave interaction time and is responsible for the enhancement of intrinsic material dissipation, making the system more absorptive with less material.The work was supported by the Spanish Ministry of Science and Innovation and European Union FEDER through project FIS2011-29734-C02-01. J.C. gratefully acknowledges financial support from the Danish Council for Independent Research and a Sapere Aude grant (12-134776). V. R. G. gratefully acknowledges financial support from the ''Contratos Post-Doctorales Campus Excelencia Internacional'' UPV CEI-01-11.Christensen, J.; Romero García, V.; Picó Vila, R.; Cebrecos Ruiz, A.; Garcia De Abajo, FJ.; Mortensen, NA.; Willatzen, M.... (2014). Extraordinary absorption of sound in porous lamella-crystals. Scientific Reports. 4(4674). https://doi.org/10.1038/srep04674S44674Mei, J. et al. Dark acoustic metamaterials as super absorbers for low-frequency sound. Nat. Commun. 3, 756 (2012).Leroy, V., Strybulevych, A., Scanlon, M. G. & Page, J. Transmission of ultrasound through a single layer of bubbles. Eur. Phys. J. E 29, 123 (2009).Leroy, V., Bretagne, A., Fink, M. H. W., Tabeling, P. & Tourin, A. Design and characterization of bubble phononic crystals. Appl. Phys. Lett. 95, 171904 (2009).Thomas, E. L. Applied physics: Bubbly but quiet. Nature 462, 990 (2009).Romero-García, V., Sánchez-Pérez, J. V. & Garcia-Raffi, L. M. Tunable wideband bandstop acoustic filter based on two-dimensional multiphysical phenomena periodic systems. J. Appl. Phys. 110, 014904 (2011).Garcia-Chocano, V. M., Cabrera, S. & Sanchez-Dehesa, J. Broadband sound absorption by lattices of microperforated cylindrical shells. Appl. Phys. Lett. 101, 184101 (2012).Kushwaha, M. S., Halevi, P., Dobrzynski, L. & Djafari-Rouhani, B. Acoustic band structure of periodic elastic composites. Phys. Rev. Lett. 71, 2022 (1993).Vasseur, J. O. et al. Experimental and Theoretical Evidence for the Existence of Absolute Acoustic Band Gaps in Two-Dimensional Solid Phononic Crystals. Phys. Rev. Lett. 86, 3012 (2001).Liu, Z. et al. Locally Resonant Sonic Materials. Science 289, 1734 (2000).Christensen, J., Martin-Moreno, L. & Garcia-Vidal, F. J. All-angle blockage of sound by an acoustic double-fishnet metamaterial. Appl. Phys. Lett. 97, 134106 (2010).Botten, L. C., Craig, M. S., McPhedran, R. C., Adams, J. L. & Andrewartha, J. R. The finitely conducting lamellar diffraction grating. Optica Acta 28, 1087 (1981).McPhedran, R. C., Botten, L. C., Craif, M. S., Neviere, M. & Maystre, D. Lossy lamellar gratings in the quasistatic limit. Optica Acta 29, 289 (1982).Kravets, V. G., Schedin, F. & Grigorenko, A. N. Plasmonic blackbody: Almost complete absorption of light in nanostructured metallic coatings. Phys. Rev. B 78, 205405 (2008).Sondergaard, T. et al. Plasmonic black gold by adiabatic nanofocusing and absorption of light in ultra-sharp convex grooves. Nat. Commun. 3, 969 (2012).Clapham, P. B. & Hurtley, M. C. Reduction of Lens Reflexion by the Moth Eye Principle. Nature Vol. 244, 281 (1973).Garcia-Vidal, F. J., Pitarke, J. M. & Pendry, J. B. Effective Medium Theory of the Optical Properties of Aligned Carbon Nanotubes. Phys. Rev. Lett. 78, 4289 (1997).Yang, Z., Ci, L., Bur, J. A., Lin, S. & Ajayan, P. M. Experimental Observation of an Extremely Dark Material Made By a Low-Density Nanotube Array. Nano Lett. 8, 446 (2008).Garcia-Vidal, F. J. Metamaterials: Towards the dark side. Nat. Photonics 2, 215 (2008).Mizunoa, K. et al. A black body absorber from vertically aligned single-walled carbon nanotubes. Proc. Natl. Acad. Sci. USA 106, 6044 (2009).Lidorkis, E. & Ferrari, A. C. Photonics with Multiwall Carbon Nanotube Arrays. ACS Nano 3, 1238 (2009).Beenakker, C. W. J. & Brouwer, P. W. Distribution of the reflection eigenvalues of a weakly absorbing chaotic cavity. Physica E 9, 463 (2001).Lafarge, D., Lemarinier, P., Allard, J. F. & Tarnow, V. Dynamic compressibility of air in porous structures at audible frequencies. J. Acoust. Soc. Am. 102, 1995 (1997), With the macroscopic parameters: ϕ = 0.94, α∞ = 1, σ = 20000 Nm−4s and Λ = Λ′ = 0.41 μm.García de Abajo, F. J. Colloquium: Light scattering by particle and hole arrays. Rev. Mod. Phys. 79, 1267–1290 (2007)