A Smartphone-Based Tool for Rapid, Portable, and Automated Wide-Field Retinal Imaging.

Purpose:High-quality, wide-field retinal imaging is a valuable method for screening preventable, vision-threatening diseases of the retina. Smartphone-based retinal cameras hold promise for increasing access to retinal imaging, but variable image quality and restricted field of view can limit their utility. We developed and clinically tested a smartphone-based system that addresses these challenges with automation-assisted imaging. Methods:The system was designed to improve smartphone retinal imaging by combining automated fixation guidance, photomontage, and multicolored illumination with optimized optics, user-tested ergonomics, and touch-screen interface. System performance was evaluated from images of ophthalmic patients taken by nonophthalmic personnel. Two masked ophthalmologists evaluated images for abnormalities and disease severity. Results:The system automatically generated 100° retinal photomontages from five overlapping images in under 1 minute at full resolution (52.3 pixels per retinal degree) fully on-phone, revealing numerous retinal abnormalities. Feasibility of the system for diabetic retinopathy (DR) screening using the retinal photomontages was performed in 71 diabetics by masked graders. DR grade matched perfectly with dilated clinical examination in 55.1% of eyes and within 1 severity level for 85.2% of eyes. For referral-warranted DR, average sensitivity was 93.3% and specificity 56.8%. Conclusions:Automation-assisted imaging produced high-quality, wide-field retinal images that demonstrate the potential of smartphone-based retinal cameras to be used for retinal disease screening. Translational Relevance:Enhancement of smartphone-based retinal imaging through automation and software intelligence holds great promise for increasing the accessibility of retinal screening

An integrated assessment of the potential impacts of climate change on Indiana forests

Forests provide myriad ecosystem services, many of which are vital to local and regional economies. Consequently, there is a need to better understand how predicted changes in climate will impact forests dynamics and the implications of such changes for society as a whole. Here we focus on the impacts of climate change on Indiana forests, which are representative of many secondary growth broadleaved forests in the greater Midwest region in terms of their land use history and current composition. We find that predicted changes in climate for the state – warmer and wetter winters/springs and hotter and potentially drier summers – will dramatically shape forest communities, resulting in new assemblages of trees and wildlife that differ from forest communities of the past or present. Overall, suitable habitat is expected to decline for 17-29 percent of tree species and increase for 43-52 percent of tree species in the state, depending on the region and climate scenario. Such changes have important consequences for wildlife that depend on certain tree species or have ranges with strong sensitivities to climate. Additionally, these changes will have potential economic impacts on Indiana industries that depend on forest resources and products (both timber and non-timber). Finally, we offer some practical suggestions on how management may minimize the extent of climate-induced ecological impacts, and highlight a case study from a tree planting initiative currently underway in the Patoka River National Wildlife Refuge and Management Area

A decade of movement ecology

Movement is fundamental to life, shaping population dynamics, biodiversity patterns, and ecosystem structure. Recent advances in tracking technology have enabled fundamental questions about movement to be tackled, leading to the development of the movement ecology framework (MEF), considered a milestone in the field [1]. The MEF introduced an integrative theory of organismal movement, linking internal state, motion capacity and navigation capacity to external factors. Here, a decade later, we investigated the current state of research in the field. Using a text mining approach on >8000 peer-reviewed papers in movement ecology, we explored the main research topics, evaluated the impact of the MEF, and assessed changes in the use of technological devices, software and statistical methods. The number of publications has increased considerably and there have been major technological changes in the past decade (i.e.~increased use of GPS devices, accelerometers and video cameras, and a convergence towards R), yet we found that research focuses on the same questions, specifically, on the effect of environmental factors on movement and behavior. In practice, it appears that movement ecology research does not reflect the MEF. We call on researchers to transform the field from technology-driven to embrace interdisciplinary collaboration, in order to reveal key processes underlying movement (e.g.~navigation), as well as evolutionary, physiological and life-history consequences of particular strategies

Sex-specific effects of wind on the flight decisions of a sexually-dimorphic soaring bird

1. In a highly dynamic airspace, flying animals are predicted to adjust foraging behaviour to variable wind conditions to minimize movement costs. 2. Sexual size dimorphism is widespread in wild animal populations, and for large soaring birds which rely on favourable winds for energy‐efficient flight, differences in morphology, wing loading and associated flight capabilities may lead males and females to respond differently to wind. However, the interaction between wind and sex has not been comprehensively tested. 3. We investigated, in a large sexually dimorphic seabird which predominantly uses dynamic soaring flight, whether flight decisions are modulated to variation in winds over extended foraging trips, and whether males and females differ. 4. Using GPS loggers we tracked 385 incubation foraging trips of wandering albatrosses Diomedea exulans , for which males are c . 20% larger than females, from two major populations (Crozet and South Georgia). Hidden Markov models were used to characterize behavioural states—directed flight, area‐restricted search (ARS) and resting—and model the probability of transitioning between states in response to wind speed and relative direction, and sex. 5. Wind speed and relative direction were important predictors of state transitioning. Birds were much more likely to take off (i.e. switch from rest to flight) in stronger headwinds, and as wind speeds increased, to be in directed flight rather than ARS. Males from Crozet but not South Georgia experienced stronger winds than females, and males from both populations were more likely to take‐off in windier conditions. 6. Albatrosses appear to deploy an energy‐saving strategy by modulating taking‐off, their most energetically expensive behaviour, to favourable wind conditions. The behaviour of males, which have higher wing loading requiring faster speeds for gliding flight, was influenced to a greater degree by wind than females. As such, our results indicate that variation in flight performance drives sex differences in time–activity budgets and may lead the sexes to exploit regions with different wind regimes

Indiana\u27s Future Forests: A Report from the Indiana Climate Change Impacts Assessment

Over the next century, rising temperatures and changing precipitation patterns across the Midwest will likely have profound consequences for Indiana’s forests. Such changes include shifts in the distributions and abundances of trees, understory plants and wildlife, as well as changes to the environmental, economic and cultural benefits these forests provide. This report from the Indiana Climate Change Impacts Assessment (IN CCIA) examines the direct and indirect impacts that climate change is expected to have on Indiana’s forests. The report specifically addresses forest regeneration, forest composition, tree growth and harvest, wildlife habitat and forest products

Navigating through the r packages for movement

Case No. 900052-CA Category No. 14b APPEAL FROM AN ORDER OF SUMMARY JUDGMENT AND DISMISSAL OF COMPLAINT WITH PREJUDICE OF THE SECOND JUDICIAL DISTRICT COURT FOR DAVIS COUNTY, STATE OF UTAH JUDGE DOUGLAS L. CORNABY REPLY BRIEF OF APPELLANT

Recent trends in movement ecology of animals and human mobility

Movement is fundamental to life, shaping population dynamics, biodiversity patterns, and ecosystem structure. In 2008, the movement ecology framework (MEF Nathan et al. in PNAS 105(49):19052–19059, 2008) introduced an integrative theory of organismal movement—linking internal state, motion capacity, and navigation capacity to external factors—which has been recognized as a milestone in the field. Since then, the study of movement experienced a technological boom, which provided massive quantities of tracking data of both animal and human movement globally and at ever finer spatio-temporal resolutions. In this work, we provide a quantitative assessment of the state of research within the MEF, focusing on animal movement, including humans and invertebrates, and excluding movement of plants and microorganisms. Using a text mining approach, we digitally scanned the contents of [Formula: see text] papers from 2009 to 2018 available online, identified tools and methods used, and assessed linkages between all components of the MEF. Over the past decade, the publication rate has increased considerably, along with major technological changes, such as an increased use of GPS devices and accelerometers and a majority of studies now using the R software environment for statistical computing. However, animal movement research still largely focuses on the effect of environmental factors on movement, with motion and navigation continuing to receive little attention. A search of topics based on words featured in abstracts revealed a clustering of papers among marine and terrestrial realms, as well as applications and methods across taxa. We discuss the potential for technological and methodological advances in the field to lead to more integrated and interdisciplinary research and an increased exploration of key movement processes such as navigation, as well as the evolutionary, physiological, and life-history consequences of movement

Modeling acoustic propagation of airgun array pulses recorded on tagged sperm whales (Physeter macrocephalus)

Author Posting. © Acoustical Society of America, 2006. This article is posted here by permission of Acoustical Society of America for personal use, not for redistribution. The definitive version was published in Journal of the Acoustical Society of America 120 (2006): 4100-4114, doi:10.1121/1.2359705.In 2002 and 2003, tagged sperm whales (Physeter macrocephalus) were experimentally exposed to airgun pulses in the Gulf of Mexico, with the tags providing acoustic recordings at measured ranges and depths. Ray trace and parabolic equation (PE) models provided information about sound propagation paths and accurately predicted time of arrival differences between multipath arrivals. With adequate environmental information, a broadband acoustic PE model predicted the relative levels of multipath arrivals recorded on the tagged whales. However, lack of array source signature data limited modeling of absolute received levels. Airguns produce energy primarily below 250 Hz, with spectrum levels about 20–40 dB lower at 1 kHz. Some arrivals recorded near the surface in 2002 had energy predominantly above 500 Hz; a surface duct in the 2002 sound speed profile helps explain this effect, and the beampattern of the source array also indicates an increased proportion of high-frequency sound at near-horizontal launch angles. These findings indicate that airguns sometimes expose animals to measurable sound energy above 250 Hz, and demonstrate the influences of source and environmental parameters on characteristics of received airgun pulses. The study also illustrates that on-axis source levels and simple geometric spreading inadequately describe airgun pulse propagation and the extent of exposure zones.Funding for this work was provided by the Office of Naval Research, the U.S. Department of the Interior Minerals Management Service Cooperative Agreements Nos. 1435-01-02- CA-85186 and NA87RJ0445, and the Industry Research Funding Coalition. S.L.D.R. was supported by a National Science Foundation Graduate Research Fellowship

Hypthesis and theory

Seabirds are amongst the most mobile of all animal species and spend large amounts of their lives at sea. They cross vast areas of ocean that appear superficially featureless, and our understanding of the mechanisms that they use for navigation remains incomplete, especially in terms of available cues. In particular, several large-scale navigational tasks, such as homing across thousands of kilometers to breeding sites, are not fully explained by visual, olfactory or magnetic stimuli. Low-frequency inaudible sound, i.e., infrasound, is ubiquitous in the marine environment. The spatio-temporal consistency of some components of the infrasonic wavefield, and the sensitivity of certain bird species to infrasonic stimuli, suggests that infrasound may provide additional cues for seabirds to navigate, but this remains untested. Here, we propose a framework to explore the importance of infrasound for navigation. We present key concepts regarding the physics of infrasound and review the physiological mechanisms through which infrasound may be detected and used. Next, we propose three hypotheses detailing how seabirds could use information provided by different infrasound sources for navigation as an acoustic beacon, landmark, or gradient. Finally, we reflect on strengths and limitations of our proposed hypotheses, and discuss several directions for future work. In particular, we suggest that hypotheses may be best tested by combining conceptual models of navigation with empirical data on seabird movements and in-situ infrasound measurements