The Breakdown of Topology at Small Scales

We discuss how a topology (the Zariski topology) on a space can appear to break down at small distances due to D-brane decay. The mechanism proposed coincides perfectly with the phase picture of Calabi-Yau moduli spaces. The topology breaks down as one approaches non-geometric phases. This picture is not without its limitations, which are also discussed.Comment: 12 pages, 2 figure

Quivers from Matrix Factorizations

We discuss how matrix factorizations offer a practical method of computing the quiver and associated superpotential for a hypersurface singularity. This method also yields explicit geometrical interpretations of D-branes (i.e., quiver representations) on a resolution given in terms of Grassmannians. As an example we analyze some non-toric singularities which are resolved by a single CP1 but have "length" greater than one. These examples have a much richer structure than conifolds. A picture is proposed that relates matrix factorizations in Landau-Ginzburg theories to the way that matrix factorizations are used in this paper to perform noncommutative resolutions.Comment: 33 pages, (minor changes

C^2/Z_n Fractional branes and Monodromy

We construct geometric representatives for the C^2/Z_n fractional branes in terms of branes wrapping certain exceptional cycles of the resolution. In the process we use large radius and conifold-type monodromies, and also check some of the orbifold quantum symmetries. We find the explicit Seiberg-duality which connects our fractional branes to the ones given by the McKay correspondence. We also comment on the Harvey-Moore BPS algebras.Comment: 34 pages, v1 identical to v2, v3: typos fixed, discussion of Harvey-Moore BPS algebras update

Mirror Manifolds in Higher Dimension

We describe mirror manifolds in dimensions different from the familiar case of complex threefolds. We emphasize the simplifying features of dimension three and supply more robust methods that do not rely on such special characteristics and hence naturally generalize to other dimensions. The moduli spaces for Calabi--Yau $d$-folds are somewhat different from the ``special K\"ahler manifolds'' which had occurred for $d=3$, and we indicate the new geometrical structures which arise. We formulate and apply procedures which allow for the construction of mirror maps and the calculation of order-by-order instanton corrections to Yukawa couplings. Mathematically, these corrections are expected to correspond to calculating Chern classes of various parameter spaces (Hilbert schemes) for rational curves on Calabi--Yau manifolds. Our results agree with those obtained by more traditional mathematical methods in the limited number of cases for which the latter analysis can be carried out. Finally, we make explicit some striking relations between instanton corrections for various Yukawa couplings, derived from the associativity of the operator product algebra.Comment: 44 pages plus 3 tables using harvma

Homological Type of Geometric Transitions

The present paper gives an account and quantifies the change in topology induced by small and type II geometric transitions, by introducing the notion of the \emph{homological type} of a geometric transition. The obtained results agree with, and go further than, most results and estimates, given to date by several authors, both in mathematical and physical literature.Comment: 36 pages. Minor changes: A reference and a related comment in Remark 3.2 were added. This is the final version accepted for publication in the journal Geometriae Dedicat

Flop Transitions in M-theory Cosmology

We study flop-transitions for M-theory on Calabi-Yau three-folds and their applications to cosmology in the context of the effective five-dimensional supergravity theory. In particular, the additional hypermultiplet which becomes massless at the transition is included in the effective action. We find the potential for this hypermultiplet which includes quadratic and quartic terms as well as additional dependence on the Kahler moduli. By constructing explicit cosmological solutions, it is demonstrated that a flop-transition can indeed by achieved dynamically, as long as the hypermultiplet is set to zero. Once excitations of the hypermultiplet are taken into account we find that the transition is generically not completed but the system is stabilised close to the transition region. Regions of moduli space close to flop-transitions can, therefore, be viewed as preferred by the cosmological evolution.Comment: 18 pages, Latex, 8 eps-figures, typos correcte

Exceptional collections and D-branes probing toric singularities

We demonstrate that a strongly exceptional collection on a singular toric surface can be used to derive the gauge theory on a stack of D3-branes probing the Calabi-Yau singularity caused by the surface shrinking to zero size. A strongly exceptional collection, i.e., an ordered set of sheaves satisfying special mapping properties, gives a convenient basis of D-branes. We find such collections and analyze the gauge theories for weighted projective spaces, and many of the Y^{p,q} and L^{p,q,r} spaces. In particular, we prove the strong exceptionality for all p in the Y^{p,p-1} case, and similarly for the Y^{p,p-2r} case.Comment: 49 pages, 6 figures; v2 refs added; v3 published versio

Topological Field Theory and Rational Curves

We analyze the superstring propagating on a Calabi-Yau threefold. This theory naturally leads to the consideration of Witten's topological non-linear sigma-model and the structure of rational curves on the Calabi-Yau manifold. We study in detail the case of the world-sheet of the string being mapped to a multiple cover of an isolated rational curve and we show that a natural compactification of the moduli space of such a multiple cover leads to a formula in agreement with a conjecture by Candelas, de la Ossa, Green and Parkes.Comment: 20 page

Quivers, Tilings, Branes and Rhombi

We describe a simple algorithm that computes the recently discovered brane tilings for a given generic toric singular Calabi-Yau threefold. This therefore gives AdS/CFT dual quiver gauge theories for D3-branes probing the given non-compact manifold. The algorithm solves a longstanding problem by computing superpotentials for these theories directly from the toric diagram of the singularity. We study the parameter space of a-maximization; this study is made possible by identifying the R-charges of bifundamental fields as angles in the brane tiling. We also study Seiberg duality from a new perspective.Comment: 36 pages, 40 figures, JHEP

Systematic model behavior of adsorption on flat surfaces

A low density film on a flat surface is described by an expansion involving the first four virial coefficients. The first coefficient (alone) yields the Henry's law regime, while the next three correct for the effects of interactions. The results permit exploration of the idea of universal adsorption behavior, which is compared with experimental data for a number of systems