Aplikasi Teknologi Bioengineering Jebakan Sedimen di Sub DAS Citanduy Hulu

Citanduy watershed has been classified as a critical watershed in West Java. Sedimentation load at Citanduy watershed reach 5 milion cubic meters/years. It is indicated that lagoon area “Segara Anakan” was decreased about 823 hectars. Land use changes for cultivation area at Citanduy upland causes acceleration land degradation. Various efforts of the civil engineering and vegetative approach have been applied to control erosion and sedimentation. Alternative technology for controlling soil erosion and sedimentation is the application of sediment trap bioengineering. It is application on micro catchment area, environment-friendly, and easily adapted for the farmers community. The main for material of bioengineering sediment trap is made of Bamboo. Results of design that is applied in the critical area at Bukit Bitung up land (Citaduy upland) Kecamatan Tambaksari, Ciamis Region, measuring the width between 100 cm to 150 cm, whereas the height are between 80 cm to 100 cm. The application of this technology is effective sediment traps for micro catcment area of <5 hectars. Therefore for a broad cachment area more sediment traps are required. In a period of not more than 1.5 month, the sediment trap has been able to capture sediments up to 1 m3 per unit. The performance of sediment traps bioengineering also shown that bamboo as main components has grown up to not more than 30 days. The trapped sediments were restored back to the land for agricultural purposes after being add by agricultural waste. Sediments that have been processed at the same time also functions as soil amelioration or soil improvement

Unravelling the relative roles of top-down and bottom-up forces driving population change in an oceanic predator

In the open ocean ecosystem, climate and anthropogenic changes have driven biological change at both ends of the food chain. Understanding how the population dynamics of pelagic predators are simultaneously influenced by nutrient-driven processes acting from the “bottom-up” and predator-driven processes acting from the “top-down” is therefore considered an urgent task. Using a state-space demographic model, we evaluated the population trajectory of an oceanic predator, the macaroni penguin (Eudyptes chrysolophus), and numerically assessed the relative importance of bottom-up and top-down drivers acting through different demographic rates. The population trajectory was considerably more sensitive to changes in top-down control of survival compared to bottom-up control of survival or productivity. This study integrates a unique set of demographic and covariate data and highlights the benefits of using a single estimation framework to examine the links between covariates, demographic rates and population dynamic

Drivers of intrapopulation variation in resource use in a generalist predator, the macaroni penguin

Intrapopulation variation in resource use occurs in many populations of generalist predators with important community and evolutionary implications. One of the hypothesised mechanisms for such widespread variation is ecological opportunity, i.e. resource availability determined by intrinsic constraints and extrinsic conditions. In this study, we combined tracking data and stable isotope analysis to examine how breeding constraints and prey conditions influenced intrapopulation variation in resource use in a generalist predator, the macaroni penguin Eudyptes chrysolophus. Isotopic variation was also examined as a function of breeding success, individual traits and individual specialisation. Variation in isotope ratios was greatest across multiple tissue types when birds were able to undertake mid-range foraging trips (i.e. during incubation and pre-moult). This variation was highly consistent between years that spanned a 3-fold difference in local prey Euphausia superba density, and was also highly consistent at the individual level between 2 years that had similar prey densities. Furthermore, by comparing our results with previous work on the same population, it appeared that a decrease in local prey availability can also increase intrapopulation variation in resource use during periods with more restricted foraging ranges (i.e. during brood-guard and crèche). This study highlights the importance of considering ecological interactions that operate on multiple spatio-temporal scales when examining the drivers of resource use in populations of generalist predator

Seabird and seal responses to the physical environment and to spatio-temporal variation in the distribution and abundance of Antarctic krill at South Georgia, with implications for local fisheries management

We used 22 years of seasonally and spatially consistent monitoring data to explore marine predator–prey numerical response relationships. Specifically, we tested whether indices of offspring performance (e.g. offspring mass near the time of their independence and/or growth rate) from three Antarctic krill-dependent predators, showed positive relationships with estimates of krill density, determined using fishery-independent acoustic surveys undertaken towards the middle of the predator breeding season. Results showed that indices of predator reproductive performance had little relationship with krill density. In most years, average krill densities were higher on-shelf than off-shelf, potentially providing ecological buffering for predators provisioning offspring. Interestingly, positive response relationships were evident between predator offspring mass and the spatial distribution of krill, measured using indices that represent levels of inequality (patchiness) in krill distribution. These relationships were strongest using indices that reflected the off-shelf krill spatial distribution. We found that krill density and predator offspring mass were also both negatively influenced by sea surface temperature and the Southern Annular Mode, indicating that the environment exerts strong control over ecosystem processes. Finally, we consider the relevance of our results to the ecological framework used by managers responsible for setting catch limits for the regional fishery for krill

Is current management of the Antarctic krill fishery in the Atlantic sector of the Southern Ocean precautionary?

This paper explains the management of the Antarctic krill (Euphausia superba) fishery in the Atlantic sector of the Southern Ocean, and current knowledge about the state of the regional krill stock. In this region, krill fishing is permitted in an area of approximately 3.5 million km2 which is divided into four subareas (labelled Subareas 48.1 to 48.4) for management and reporting purposes. The effective regional catch limit (or ‘trigger level’), established in 1991, is 0.62 million tonnes year–1, equivalent to ~1% of the regional biomass estimated in 2000. Each subarea has also had its own catch limit, between 0.093 and 0.279 million tonnes year–1, since 2009. There is some evidence for a decline in the abundance of krill in the 1980s, but no evidence of a further decline in recent decades. Local-scale monitoring programs have been established in three of the subareas to monitor krill biomass in survey grids covering between 10 000 and 125 000 km2. Cautious extrapolation from these local monitoring programs provides conservative estimates of the regional biomass in recent years. This suggests that fishing at the trigger level would be equivalent to a long-term exploitation rate (annual catch divided by biomass) of <7%, which is below the 9.3% level considered appropriate to maintain the krill stock and support krill predators. Subarea catch limits exceed 9.3% of conservatively estimated subarea biomass in up to 20% of years due to high variability in krill biomass indices. The actual exploitation rate in each subarea has remained <3% because annual catches have been <50% of the trigger level since 1991. Comparison with the 9.3% reference exploitation rate suggests that current management is precautionary at the regional scale. The subarea catch limits help prevent excessive concentration of catch at the subarea scale. Finer-scale management might be necessary to manage the risk of adverse impacts which might occur as a result of concentrated fishing in sensitive areas or climate change. Frequent assessment of the krill stock will enhance CCAMLR’s ability to manage these risks. Continuing the local monitoring programs will provide valuable information on krill variability, but more information is required on how the monitored biomass relates to biomass at the subarea and regional scales

Enhancing the ecosystem approach for the fishery for Antarctic krill within the complex, variable and changing ecosystem at South Georgia

The objective of the ecosystem approach to fisheries management is to sustain healthy marine ecosystems and the fisheries they support. One of the earliest implementations was in the Southern Ocean, where decision rules and stock reference points were developed for managing the Antarctic krill fishery, together with an ecosystem-monitoring programme intended to aid management decisions. This latter component has not been incorporated directly into management, so here, we consider variability in the krill fishery at South Georgia, relating it to physical and biological monitoring indices, finding sea surface temperature to be a key correlate with both annual catch and long-term biological indices. Some indices from krill predators showed significant positive relationships with krill harvesting in the preceding winter, presumably indicative of the importance of winter foraging conditions. We explore how ecological structure affects results, examining two monitoring sites 100 km apart. Results suggest different biological conditions at the two sites, probably reflecting different scales of ecosystem operation, emphasizing that an appreciation of scale will enhance krill fishery management. Finally, in reviewing different drivers of ecological change, we identify important additional monitoring that would help better reflect ecosystem status, improve the utility of CEMP, providing information necessary for the ecosystem approach at South Georgia

A comparison of baleen whale density estimates derived from overlapping satellite imagery and a shipborne survey

As whales recover from commercial exploitation, they are increasing in abundance in habitats that they have been absent from for decades. However, studying the recovery and habitat use patterns of whales, particularly in remote and inaccessible regions, frequently poses logistical and economic challenges. Here we trial a new approach for measuring whale density in a remote area, using Very-High-Resolution WorldView-3 satellite imagery. This approach has capacity to provide sightings data to complement and assist traditional sightings surveys. We compare at-sea whale density estimates to estimates derived from satellite imagery collected at a similar time, and use suction-cup archival logger data to make an adjustment for surface availability. We demonstrate that satellite imagery can provide useful data on whale occurrence and density. Densities, when unadjusted for surface availability are shown to be considerably lower than those estimated by the ship survey. However, adjusted for surface availability and weather conditions (0.13 whales per km2, CV = 0.38), they fall within an order of magnitude of those derived by traditional line-transect estimates (0.33 whales per km2, CV = 0.09). Satellite surveys represent an exciting development for high-resolution image-based cetacean observation at sea, particularly in inaccessible regions, presenting opportunities for ongoing and future research

Using a risk assessment framework to spatially and temporally spread the fishery catch limit for Antarctic krill in the west Antarctic Peninsula: A template for krill fisheries elsewhere

The west Antarctic Peninsula is an important breeding and foraging location for marine predators that consume Antarctic Krill (Euphasia superba). It is also an important focus for the commercial fishery for Antarctic krill, managed by the Commission for the Conservation of Antarctic Marine Living Resources (CCAMLR). Aiming to minimise ecosystem risks from fishing, whilst enabling a sustainable fishery, CCAMLR has recently endorsed a new management framework that incorporates information about krill biomass estimates, sustainable harvest rates and a risk assessment to spatially and temporally distribute catch limits. We have applied a risk assessment framework to the west Antarctic Peninsula region (Subarea 48.1), with the aim of identifying the most appropriate management units by which to spatially and temporally distribute the local catch limit. We use the best data currently available for implementing the approach, recognising the framework is flexible and can accommodate new data, when available, to improve future estimates of risk. We evaluated 36 catch distribution scenarios for managing the fishery and provide advice about the scale at which the krill fishery can be managed. We show that the spatial distribution with which the fishery currently operates presents some of the highest risks of all scenarios evaluated. We highlight important issues that should be resolved. We emphasize that for the risk assessment to provide robust estimates of risk, it is important that the management units are at a similar scale to ecosystem function. Managing the fishery at small scales has the lowest risk but may necessitate a high level of management interaction. Our results offer advice to CCAMLR about near-term management and could provide a template for the rest of the southwest Atlantic (Area 48), or fisheries elsewhere. As each data layer influences the outcome of the risk assessment, we recommend that updated estimates of the distribution, abundance and consumption of krill, and estimates of available krill biomass will be key as CCAMLR moves forward to develop a longer-term management strategy. Finally, we highlight that the endeavours reported here are the result of a community effort, demonstrating the value of common enterprise

A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them

Custom genotyping arrays provide a flexible and accurate means of genotyping single nucleotide polymorphisms (SNPs) in a large number of individuals of essentially any organism. However, validation rates, defined as the proportion of putative SNPs that are verified to be polymorphic in a population, are often very low. A number of potential causes of assay failure have been identified, but none have been explored systematically. In particular, as SNPs are often developed from transcriptomes, parameters relating to the genomic context are rarely taken into account. Here, we assembled a draft Antarctic fur seal (Arctocephalus gazella) genome (assembly size: 2.41Gb; scaffold/contig N50: 3.1Mb/27.5kb). We then used this resource to map the probe sequences of 144 putative SNPs genotyped in 480 individuals. The number of probe-to-genome mappings and alignment length together explained almost a third of the variation in validation success, indicating that sequence uniqueness and proximity to intron-exon boundaries play an important role. The same pattern was found after mapping the probe sequences to the Walrus and Weddell seal genomes, suggesting that the genomes of species divergent by as much as 23 million years can hold information relevant to SNP validation outcomes. Additionally, re-analysis of genotyping data from seven previous studies found the same two variables to be significantly associated with SNP validation success across a variety of taxa. Finally, our study reveals considerable scope for validation rates to be improved, either by simply filtering for SNPs whose flanking sequences align uniquely and completely to a reference genome, or through predictive modeling

Humpback whale (Megaptera novaeangliae) distribution and movements in the vicinity of South Georgia and the South Sandwich Islands Marine Protected Area

Humpback whales (Megaptera novaeangliae) are showing strong recovery from commercial whaling in the western South Atlantic. In this region, humpback whales migrate annually from their winter breeding grounds off the coast of Brazil to their summer feeding grounds near to the Polar Front, an area that includes the waters of South Georgia and the South Sandwich Islands (SGSSI). This latter region includes a Marine Protected Area (MPA), which has been developed to ensure sustainable management of fisheries, and protection of foraging predators. To date, management measures within the MPA have primarily been concerned with foraging predators that rely upon Antarctic krill, including for a number of previously over-exploited species. This includes the regional humpback whale population now in recovery in the western South Atlantic. With humpback whales increasing, understanding their spatiotemporal distribution within the MPA is important as it will help inform management particularly in respect of interactions between humpback whales and the regional fishery for Antarctic krill. Here we develop habitat models from the distribution and movement patterns of 16 individuals at their high-latitude feeding grounds, south of 50°S. We show that whale habitat use varies throughout the foraging period. Upon reaching their feeding ground, whales use the area to the east of the South Sandwich Islands, moving westward into the centre of the Scotia Arc and towards South Georgia during the high summer, and then expanding back towards the east in the winter. Based on these findings, we discuss the implications for the future, including necessary research required for underpinning management