20,834 research outputs found
"Virus hunting" using radial distance weighted discrimination
Motivated by the challenge of using DNA-seq data to identify viruses in human
blood samples, we propose a novel classification algorithm called "Radial
Distance Weighted Discrimination" (or Radial DWD). This classifier is designed
for binary classification, assuming one class is surrounded by the other class
in very diverse radial directions, which is seen to be typical for our virus
detection data. This separation of the 2 classes in multiple radial directions
naturally motivates the development of Radial DWD. While classical machine
learning methods such as the Support Vector Machine and linear Distance
Weighted Discrimination can sometimes give reasonable answers for a given data
set, their generalizability is severely compromised because of the linear
separating boundary. Radial DWD addresses this challenge by using a more
appropriate (in this particular case) spherical separating boundary.
Simulations show that for appropriate radial contexts, this gives much better
generalizability than linear methods, and also much better than conventional
kernel based (nonlinear) Support Vector Machines, because the latter methods
essentially use much of the information in the data for determining the shape
of the separating boundary. The effectiveness of Radial DWD is demonstrated for
real virus detection.Comment: Published at http://dx.doi.org/10.1214/15-AOAS869 in the Annals of
Applied Statistics (http://www.imstat.org/aoas/) by the Institute of
Mathematical Statistics (http://www.imstat.org
Fantastic Behavior of High-TC Superconductor Junctions: Tunable Superconductivity
Carrier injection performed in oxygen-deficient YBa2Cu3O7(YBCO)
hetero-structure junctions exhibited tunable resistance that was entirely
different with behaviors of semiconductor devices. Tunable superconductivity in
YBCO junctions, increasing over 20 K in transition temperature, has achieved by
using electric processes. To our knowledge, this is the first observation that
intrinsic property of high TC superconductors superconductivity can be adjusted
as tunable functional parameters of devices. The fantastic phenomenon caused by
carrier injection was discussed based on a proposed charge carrier
self-trapping model and BCS theory.Comment: 5 pages, 4 figure
Dynamical excitations in the collision of 2D Bose-Einstein condensates
We carry out simulations of the collision of two components of an
adiabatically divided, quasi-2D BEC. We identify under, over and critically
damped regimes in the dipole oscillations of the components according to the
balance of internal and centre-of-mass (c.m.) energies of the components and
investigate the creation of internal excitations. We distinguish the behaviour
of this system from previous studies of quasi-1D BEC's. In particular we note
that the nature of the internal excitations is only essentially sensitive to an
initial phase difference between the components in the overdamped regime.Comment: 17 pages, 9 figure
Simulating quantum transport for a quasi-one-dimensional Bose gas in an optical lattice: the choice of fluctuation modes in the truncated Wigner approximation
We study the effect of quantum fluctuations on the dynamics of a
quasi-one-dimensional Bose gas in an optical lattice at zero-temperature using
the truncated Wigner approximation with a variety of basis sets for the initial
fluctuation modes. The initial spatial distributions of the quantum
fluctuations are very different when using a limited number of plane-wave (PW),
simple-harmonic-oscillator (SHO) and self-consistently determined Bogoliubov
(SCB) modes. The short-time transport properties of the Bose gas, characterized
by the phase coherence in the PW basis are distinct from those gained using the
SHO and SCB basis. The calculations using the SCB modes predict greater phase
decoherence and stronger number fluctuations than the other choices.
Furthermore, we observe that the use of PW modes overestimates the extent to
which atoms are expelled from the core of the cloud, while the use of the other
modes only breaks the cloud structure slightly which is in agreement with the
experimental observations [1].Comment: 12 pages, 5 figure
Subdwarf B stars from the common envelope ejection channel
From the canonical binary scenario, the majority of sdBs are produced from
low-mass stars with degenerate cores where helium is ignited in a way of
flashes. Due to numerical difficulties, the models of produced sdBs are
generally constructed from more massive stars with non-degenerate cores,
leaving several uncertainties on the exact characteristics of sdB stars.
Employing MESA, we systematically studied the characteristics of sdBs produced
from the common envelope (CE) ejection channel, and found that the sdB stars
produced from the CE ejection channel appear to form two distinct groups on the
effective temperature-gravity diagram. One group (the flash-mixing model)
almost has no H-rich envelope and crows at the hottest temperature end of the
extremely horizontal branch (EHB), while the other group has significant H-rich
envelope and spreads over the whole canonical EHB region. The key factor for
the dichotomy of the sdB properties is the development of convection during the
first helium flash, which is determined by the interior structure of the star
after the CE ejection. For a given initial stellar mass and a given core mass
at the onset of the CE, if the CE ejection stops early, the star has a
relatively massive H-rich envelope, resulting in a canonical sdB generally. The
fact of only a few short-orbital-period sdB binaries being in the flash-mixing
sdB region and the lack of He-rich sdBs in short-orbital-period binaries
indicate that the flash mixing is not very often in the products of the CE
ejection. A falling back process after the CE ejection, similar to that
happened in nova, is an appropriate way of increasing the envelope mass, then
prevents the flash mixing.Comment: accepted by A&A 12 pages, 11 figure
Hidden vortices in a Bose-Einstein condensate in a rotating double-well potential
We study vortex formation in a Bose-Einstein condensate in a rotating
double-well potential. Besides the ordinary quantized vortices and elusive
ghost vortices, "hidden" vortices are found distributing along the central
barrier. These hidden vortices are invisible like ghost vortex but carry
angular momentum. Moreover, their core size is not given by the healing length,
but is strongly influenced by the external potential. We find that the
Feynman's rule can be well satisfied only after including the hidden vortices.
There is no critical rotating frequency for the formation of hidden vortex
while there is one for the formation of ordinary visible vortices. Hidden
vortices can be revealed in the free expansion of the Bose-Einstein
condensates. In addition, the hidden vortices in a Bose-Einstein condensate can
appear in other external potentials, such as a rotating anisotropic toroidal
trap.Comment: 6pages,5figure
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