Gelsolin superfamily proteins: key regulators of cellular functions

Abstract.: Cytoskeletal rearrangement occurs in a variety of cellular processes and involves a wide spectrum of proteins. Among these, the gelsolin superfamily proteins control actin organization by severing filaments, capping filament ends and nucleating actin assembly [1]. Gelsolin is the founding member of this family, which now contains at least another six members: villin, adseverin, capG, advillin, supervillin and flightless I. In addition to their respective role in actin filament remodeling, these proteins have some specific and apparently non-overlapping particular roles in several cellular processes, including cell motility, control of apoptosis and regulation of phagocytosis (summarized in table 1). Evidence suggests that proteins belonging to the gelsolin superfamily may be involved in other processes, including gene expression regulation. This review will focus on some of the known functions of the gelsolin superfamily proteins, thus providing a basis for reflection on other possible and as yet incompletely understood roles for these protein

Modeling Spitzer observations of VV Ser. I. The circumstellar disk of a UX Orionis star

We present mid-infrared Spitzer-IRS spectra of the well-known UX Orionis star VV Ser. We combine the Spitzer data with interferometric and spectroscopic data from the literature covering UV to submillimeter wavelengths. The full set of data are modeled by a two-dimensional axisymmetric Monte Carlo radiative transfer code. The model is used to test the prediction of (Dullemond et al. 2003) that disks around UX Orionis stars must have a self-shadowed shape, and that these disks are seen nearly edge-on, looking just over the edge of a puffed-up inner rim, formed roughly at the dust sublimation radius. We find that a single, relatively simple model is consistent with all the available observational constraints spanning 4 orders of magnitude in wavelength and spatial scales, providing strong support for this interpretation of UX Orionis stars. The grains in the upper layers of the puffed-up inner rim must be small (0.01-0.4 micron) to reproduce the colors (R_V ~ 3.6) of the extinction events, while the shape and strength of the mid-infrared silicate emission features indicate that grains in the outer disk (> 1-2 AU) are somewhat larger (0.3-3.0 micron). From the model fit, the location of the puffed-up inner rim is estimated to be at a dust temperature of 1500 K or at 0.7-0.8 AU for small grains. This is almost twice the rim radius estimated from near-infrared interferometry. A best fitting model for the inner rim in which large grains in the disk mid-plane reach to within 0.25 AU of the star, while small grains in the disk surface create a puffed-up inner rim at ~0.7-0.8 AU, is able to reproduce all the data, including the near-infrared visibilities. [Abstract abridged]Comment: 12 pages, accepted for publication in Ap

Protostellar holes: Spitzer Space Telescope observations of the protostellar binary IRAS16293-2422

Mid-infrared (23-35 micron) emission from the deeply embedded "Class 0" protostar IRAS16293-2422 is detected with the Spitzer Space Telescope infrared spectrograph. A detailed radiative transfer model reproducing the full spectral energy distribution (SED) from 23 micron to 1.3 mm requires a large inner cavity of radius 600 AU in the envelope to avoid quenching the emission from the central sources. This is consistent with a previous suggestion based on high angular resolution millimeter interferometric data. An alternative interpretation using a 2D model of the envelope with an outflow cavity can reproduce the SED but not the interferometer visibilities. The cavity size is comparable to the centrifugal radius of the envelope and therefore appears to be a natural consequence of the rotation of the protostellar core, which has also caused the fragmentation leading to the central protostellar binary. With a large cavity such as required by the data, the average temperature at a given radius does not increase above 60-80 K and although hot spots with higher temperatures may be present close to each protostar, these constitute a small fraction of the material in the inner envelope. The proposed cavity will also have consequences for the interpretation of molecular line data, especially of complex species probing high temperatures in the inner regions of the envelope.Comment: Accepted for publication in ApJ Letter

Dust retention in protoplanetary disks

Context: Protoplanetary disks are observed to remain dust-rich for up to several million years. Theoretical modeling, on the other hand, raises several questions. Firstly, dust coagulation occurs so rapidly, that if the small dust grains are not replenished by collisional fragmentation of dust aggregates, most disks should be observed to be dust poor, which is not the case. Secondly, if dust aggregates grow to sizes of the order of centimeters to meters, they drift so fast inwards, that they are quickly lost. Aims: We attempt to verify if collisional fragmentation of dust aggregates is effective enough to keep disks 'dusty' by replenishing the population of small grains and by preventing excessive radial drift. Methods: With a new and sophisticated implicitly integrated coagulation and fragmentation modeling code, we solve the combined problem of coagulation, fragmentation, turbulent mixing and radial drift and at the same time solve for the 1-D viscous gas disk evolution. Results: We find that for a critical collision velocity of 1 m/s, as suggested by laboratory experiments, the fragmentation is so effective, that at all times the dust is in the form of relatively small particles. This means that radial drift is small and that large amounts of small dust particles remain present for a few million years, as observed. For a critical velocity of 10 m/s, we find that particles grow about two orders of magnitude larger, which leads again to significant dust loss since larger particles are more strongly affected by radial drift.Comment: Letter accepted 3 July 2009, included comments of language edito

Hydrolysable tannin-based diet rich in gallotannins has a minimal impact on pig performance but significantly reduces salivary and bulbo-urethral gland size

Tannins have long been considered ‘anti-nutritional’ factors in monogastric nutrition, shown to reduce feed intake and palatability. However, recent studies revealed that compared to condensed tannins, hydrolysable tannins (HT) appear to have far less impact on growth performance but may be inhibitory to the total activity of caecal bacteria. This in turn could reduce microbial synthesis of skatole and indole in the hindgut of entire males (EM). Thus, the objective of this study was to determine the impact of a group of dietary HT on growth performance, carcass traits and boar taint compounds of group housed EM. For the study, 36 Swiss Large White boars were assigned within litter to three treatment groups. Boars were offered ad libitum one of three finisher diets supplemented with 0 (C), 15 (T15) or 30 g/kg (T30) of HT from d 105 to 165 of age. Growth performance, carcass characteristics, boar taint compounds in the adipose tissue and CYP2E1, CYP1A2, and CYP2A19 gene expression in the liver was assessed. Compared to C, feed efficiency but not daily gain and daily feed intake was lower (P < 0.05) in T15 and T30 boars. Except for the percent carcass weight loss during cooling, which tended (P < 0.10) to be greater in T30 than C and T15, carcass characteristics were not affected by the diets. In line with the numerically lower androstenone level, bulbo-urethral and salivary glands of T30 boars were lighter (P < 0.05) than of T15 with intermediate values for C. Indole level was lower (P < 0.05) in the adipose tissue of T30 than C pigs with intermediate levels in T15. Skatole levels tended (P < 0.10) to be lower in T30 and C than T15 pigs. Hepatic gene expression of CYP isoenzymes did not differ between treatment groups but was negatively correlated (P < 0.05) with androstenone (CYP2E1 and CYP1A2), skatole (CYP2E1, CYP2A) and indole (CYP2A) level. In line with the numerically highest androstenone and skatole concentrations, boar taint odour but not flavour was detected by the panelists in loins from T15 compared with loins from C and T30 boars. These results provide evidence that HT affected metabolism of indolic compounds and androstenone and that they affected the development of accessory sex glands. However, the effects were too small to be detected by sensory evaluation

Hot Organic Molecules Toward a Young Low-Mass Star: A Look at Inner Disk Chemistry

Spitzer Space Telescope spectra of the low mass young stellar object (YSO) IRS 46 (L_bol ~ 0.6 L_sun) in Ophiuchus reveal strong vibration-rotation absorption bands of gaseous C2H2, HCN, and CO2. This is the only source out of a sample of ~100 YSO's that shows these features and the first time they are seen in the spectrum of a solar-mass YSO. Analysis of the Spitzer data combined with Keck L- and M-band spectra gives excitation temperatures of > 350 K and abundances of 10(-6)-10(-5) with respect to H2, orders of magnitude higher than those found in cold clouds. In spite of this high abundance, the HCN J=4-3 line is barely detected with the James Clerk Maxwell Telescope, indicating a source diameter less than 13 AU. The (sub)millimeter continuum emission and the absence of scattered light in near-infrared images limits the mass and temperature of any remnant collapse envelope to less than 0.01 M_sun and 100 K, respectively. This excludes a hot-core type region as found in high-mass YSO's. The most plausible origin of this hot gas rich in organic molecules is in the inner (<6 AU radius) region of the disk around IRS 46, either the disk itself or a disk wind. A nearly edge-on 2-D disk model fits the spectral energy distribution (SED) and gives a column of dense warm gas along the line of sight that is consistent with the absorption data. These data illustrate the unique potential of high-resolution infrared spectroscopy to probe organic chemistry, gas temperatures and kinematics in the planet-forming zones close to a young star.Comment: 4 pages, 4 figures; To appear in Astrophysical Journal Letter

Stellar-Mass-Dependent Disk Structure in Coeval Planet-Forming Disks

Previous studies suggest that the planet-forming disks around very-low-mass stars/brown dwarfs may be flatter than those around more massive stars, in contrast to model predictions of larger scale heights for gas-disks around lower-mass stars. We conducted a statistically robust study to determine whether there is evidence for stellar-mass-dependent disk structure in planet-forming disks. We find a statistically significant difference in the Spitzer/IRAC color distributions of disks around very-low-mass and low-mass stars all belonging to the same star-forming region, the Chamaeleon I star-forming region. We show that self consistently calculated disk models cannot fit the median spectral energy distributions (SEDs) of the two groups. These SEDs can be only explained by flatter disk models, consistent with the effect of dust settling in disks. We find that relative to the disk structure predicted for flared disks the required reduction in disk scale height is anti-correlated with the stellar mass, i.e. disks around lower-mass stars are flatter. Our results show that the initial and boundary conditions of planet formation are stellar-mass-dependent, an important finding that must be considered in planet formation models.Comment: Astrophysical Journal, in pres

Probing protoplanetary disks with silicate emission: Where is the silicate emission zone?

Recent results indicate that the grain size and crystallinity inferred from observations of silicate features may be correlated with the spectral type of the central star and/or disk geometry. In this paper, we show that grain size, as probed by the 10 μm silicate feature peak-to-continuum and 11.3 to 9.8 μm flux ratios, is inversely proportional to log Lsstarf. These trends can be understood using a simple two-layer disk model for passive irradiated flaring disks, CGPLUS. We find that the radius, R10, of the 10 μm silicate emission zone in the disk goes as (L*/L☉)^0.56, with slight variations depending on disk geometry (flaring angle and inner disk radius). The observed correlations, combined with simulated emission spectra of olivine and pyroxene mixtures, imply a dependence of grain size on luminosity. Combined with the fact that R10 is smaller for less luminous stars, this implies that the apparent grain size of the emitting dust is larger for low-luminosity sources. In contrast, our models suggest that the crystallinity is only marginally affected, because for increasing luminosity, the zone for thermal annealing (assumed to be at T > 800 K) is enlarged by roughly the same factor as the silicate emission zone. The observed crystallinity is affected by disk geometry, however, with increased crystallinity in flat disks. The apparent crystallinity may also increase with grain growth due to a corresponding increase in contrast between crystalline and amorphous silicate emission bands

Global MHD simulations of stratified and turbulent protoplanetary discs. I. Model properties

We present the results of global 3-D MHD simulations of stratified and turbulent protoplanetary disc models. The aim of this work is to develop thin disc models capable of sustaining turbulence for long run times, which can be used for on-going studies of planet formation in turbulent discs. The results are obtained using two codes written in spherical coordinates: GLOBAL and NIRVANA. Both are time--explicit and use finite differences along with the Constrained Transport algorithm to evolve the equations of MHD. In the presence of a weak toroidal magnetic field, a thin protoplanetary disc in hydrostatic equilibrium is destabilised by the magnetorotational instability (MRI). When the resolution is large enough (25 vertical grid cells per scale height), the entire disc settles into a turbulent quasi steady-state after about 300 orbits. Angular momentum is transported outward such that the standard alpha parameter is roughly 4-6*10^{-3}. We find that the initial toroidal flux is expelled from the disc midplane and that the disc behaves essentially as a quasi-zero net flux disc for the remainder of the simulation. As in previous studies, the disc develops a dual structure composed of an MRI--driven turbulent core around its midplane, and a magnetised corona stable to the MRI near its surface. By varying disc parameters and boundary conditions, we show that these basic properties of the models are robust. The high resolution disc models we present in this paper achieve a quasi--steady state and sustain turbulence for hundreds of orbits. As such, they are ideally suited to the study of outstanding problems in planet formation such as disc--planet interactions and dust dynamics.Comment: 19 pages, 29 figures, accepted in Astronomy & Astrophysic

Cold Disks: Spitzer Spectroscopy of Disks around Young Stars with Large Gaps

We have identified four circumstellar disks with a deficit of dust emission from their inner 15-50 AU. All four stars have F-G spectral type, and were uncovered as part of the Spitzer Space Telescope ``Cores to Disks'' Legacy Program Infrared Spectrograph (IRS) first look survey of ~100 pre-main sequence stars. Modeling of the spectral energy distributions indicates a reduction in dust density by factors of 100-1000 from disk radii between ~0.4 and 15-50 AU, but with massive gas-rich disks at larger radii. This large contrast between the inner and outer disk has led us to use the term `cold disks' to distinguish these unusual systems. However, hot dust [0.02-0.2 Mmoon] is still present close to the central star (R ~0.8 AU). We introduce the 30/13 micron, flux density ratio as a new diagnostic for identifying cold disks. The mechanisms for dust clearing over such large gaps are discussed. Though rare, cold disks are likely in transition from an optically thick to an optically thin state, and so offer excellent laboratories for the study of planet formation.Comment: 13 pages, 3 figures, accepted to ApJ