Immunomodulatory Activity of Sambucus mexicana and Trichostema lanatum on LPS Stimulated RAW 264.7 Macrophage Cells

Chumash medicinal plants Sambucus mexicana (Mexican elderberry) and Trichostema lanatum (woolly blue curls) were tested for immunomodulatory activity. Anti-inflammatory effects were determined by treating LPS induced RAW 264.7 macrophage cells with plant extracts and measuring the levels of cytokines: tumor necrosis factor alpha (TNF-alpha) and interleukin 10 (IL-10). We hypothesized that both plants would exert immunomodulatory activity by reducing the pro-inflammatory production of TNF-alpha or by promoting M2 polarization with a concurrent increase in IL-10 production. At concentration 0.01 mg/mL woolly blue curls and Mexican elderberry demonstrated anti-inflammatory activity by reducing the concentration of TNF-alpha in vitro, while levels of IL-10 were indistinguishable

Outcomes of Extravesical Versus Intravesical Ureteral Reimplantation

Purpose: The purpose of our study was to examine outcomes and compare length of stay after extravesical and intravesical ureteral reimplantation at our institution. Materials and Methods: Retrospective review was performed of 30 patients (55 ureters) with vesicoureteral reflux who underwent either the Cohen (intravesical) cross-trigonal procedure or the extravesical (detrusorrhaphy) approach. Each patient had documented follow-up consisting of a postoperative renal ultrasound and/or a voiding cystourethrogram (VCUG). Inclusion criteria was the presence of primary vesicoureteral reflux. Exclusion criteria were patients who had undergone a previous repair and patients in whom results of neither the renal ultrasound nor the VCUG were available. Results: There were no significant cases of obstruction or wound infection with either approach. Two patients who underwent the extravesical approach had persistent reflux on VCUG three months postoperatively, but both resolved by fifteen months. Average length of stay was only 3.00 ± 1.33 days for the extravesical approach, compared to 5.36 ± 1.75 days for the intravesical approach ( P = .0003 ). Conclusions: Given that by fifteen months success rates were the same with either approach, the extravesical approach is comparable to the intravesical technique and is a viable option in terms of outcome and economics given the shorter length of hospital stay

An Ethnobotanical approach to finding antimicrobial compounds in wooly blue curls (Trichostema lanatum) using a Kirby-Bauer disc diffusion assay

Plants can be an important source of creativity and production of new drugs. In this study, extracts of wooly blue curls (Trichostema lanatum) were made using DMSO and tested for antimicrobial activity on a panel of bacteria commonly found in separate ecological niches. Wooly blue curls (WBC) was chosen due to its being recorded as a strong disinfectant by the Chumash people. It was found that WBC does exhibit antimicrobial activity against gram positive bacteria and not against gram negative bacteria. However, gram negative bacteria with reduced drug efflux function became susceptible to the WBC extract

Tracking Vector Magnetograms with the Magnetic Induction Equation

The differential affine velocity estimator (DAVE) developed in Schuck (2006) for estimating velocities from line-of-sight magnetograms is modified to directly incorporate horizontal magnetic fields to produce a differential affine velocity estimator for vector magnetograms (DAVE4VM). The DAVE4VM's performance is demonstrated on the synthetic data from the anelastic pseudospectral ANMHD simulations that were used in the recent comparison of velocity inversion techniques by Welsch (2007). The DAVE4VM predicts roughly 95% of the helicity rate and 75% of the power transmitted through the simulation slice. Inter-comparison between DAVE4VM and DAVE and further analysis of the DAVE method demonstrates that line-of-sight tracking methods capture the shearing motion of magnetic footpoints but are insensitive to flux emergence -- the velocities determined from line-of-sight methods are more consistent with horizontal plasma velocities than with flux transport velocities. These results suggest that previous studies that rely on velocities determined from line-of-sight methods such as the DAVE or local correlation tracking may substantially misrepresent the total helicity rates and power through the photosphere.Comment: 30 pages, 13 figure

Sediment Microbiomes Associated with Critical Habitat of the Juvenile American Horseshoe Crab; Limulus Polyphemus

Plumb Beach, Brooklyn, New York in USA is an important horseshoe crab breeding and nursery ground that has experienced substantial anthropogenic influence, including pollution, erosion and subsequent restoration. Since little is known about the relationship between sediment microbial communities and juvenile horseshoe crab survival, next generation sequencing was used to characterize and compare the sediment microbiome of three distinct areas of Plumb Beach:- a tidal creek with abundant juveniles, East Beach with moderate number of juveniles, and West Beach- a highly disturbed area where juvenile crabs are rarely seen. The microbiome of juvenile crab intestinal content (both dissected gut content and fecal flush content) from the tidal creek site was also examined. The results showed that in our 2017 survey, the overall dominant sediment orders at all beach sites were Vibrionales (30%), Flavobacteriales (22%) and Alteromonadales (21%). Although alpha diversity was similar among the three beach sites, Bray-Curtis distances assessed by Permanova revealed significant differences in Beta diversity, with a unique microbial assemblage found in the tidal creek. Both crab gut and fecal flush samples did not sequence well, showing low species diversity and very high variability. This study is the first to use next generation sequencing to characterize Plumb Beach sediment microbes and the first attempt to examine the gut microbiome of juvenile horseshoe crabs. This information will contribute to understanding the relationships between sediment microbial assemblages and juvenile crab populations within this important urban habitat

Genetically induced production of secondary metabolites in Bacillus megaterium

Historically, the most important source of new antibiotic drug leads has been small organic compounds made by bacteria. Many antibiotics have been developed into pharmaceutical agents from these molecules (often called secondary metabolites) produced by soil bacteria. Bacillus species are soil bacteria known for producing various antimicrobials including gramicidin, bacitracin, surfactin, and others. Bacillus megaterium is a widely used model gram positive bacterium. Although there has been extensive research on this organism, little is known about its secondary metabolites. We hypothesized that the production of secondary metabolites in this organism could be induced by replacing promoters controlling the expression of genes within the identified clusters. In this study, gene clusters that are predicted to control the production of secondary metabolites were identified using the antiSMASH bioinformatics platform. Phenotypic changes in the secondary metabolite profile of B. megaterium were observed when culture conditions were varied indicating that target metabolites are accessible for chemical analysis. To increase production of targeted secondary metabolites, the native promoter of identified secondary metabolite gene clusters will be replaced by an inducible promoter using plasmid mediated chromosomal integration

GSE statistics without spin

Energy levels statistics following the Gaussian Symplectic Ensemble (GSE) of Random Matrix Theory have been predicted theoretically and observed numerically in numerous quantum chaotic systems. However in all these systems there has been one unifying feature: the combination of half-integer spin and time-reversal invariance. Here we provide an alternative mechanism for obtaining GSE statistics that is based on geometric symmetries of a quantum system which alleviates the need for spin. As an example, we construct a quantum graph with a particular discrete symmetry given by the quaternion group Q8. GSE statistics is then observed within one of its subspectra.Comment: 5 pages, 6 figure

Robust Chauvenet Outlier Rejection

Sigma clipping is commonly used in astronomy for outlier rejection, but the number of standard deviations beyond which one should clip data from a sample ultimately depends on the size of the sample. Chauvenet rejection is one of the oldest, and simplest, ways to account for this, but, like sigma clipping, depends on the sample's mean and standard deviation, neither of which are robust quantities: Both are easily contaminated by the very outliers they are being used to reject. Many, more robust measures of central tendency, and of sample deviation, exist, but each has a tradeoff with precision. Here, we demonstrate that outlier rejection can be both very robust and very precise if decreasingly robust but increasingly precise techniques are applied in sequence. To this end, we present a variation on Chauvenet rejection that we call "robust" Chauvenet rejection (RCR), which uses three decreasingly robust/increasingly precise measures of central tendency, and four decreasingly robust/increasingly precise measures of sample deviation. We show this sequential approach to be very effective for a wide variety of contaminant types, even when a significant -- even dominant -- fraction of the sample is contaminated, and especially when the contaminants are strong. Furthermore, we have developed a bulk-rejection variant, to significantly decrease computing times, and RCR can be applied both to weighted data, and when fitting parameterized models to data. We present aperture photometry in a contaminated, crowded field as an example. RCR may be used by anyone at https://skynet.unc.edu/rcr, and source code is available there as well.Comment: 62 pages, 48 figures, 7 tables, accepted for publication in ApJ

Spectral Statistics of "Cellular" Billiards

For a bounded planar domain $\Omega^0$ whose boundary contains a number of flat pieces $\Gamma_i$ we consider a family of non-symmetric billiards $\Omega$ constructed by patching several copies of $\Omega^0$ along $\Gamma_i$'s. It is demonstrated that the length spectrum of the periodic orbits in $\Omega$ is degenerate with the multiplicities determined by a matrix group $G$. We study the energy spectrum of the corresponding quantum billiard problem in $\Omega$ and show that it can be split in a number of uncorrelated subspectra corresponding to a set of irreducible representations $\alpha$ of $G$. Assuming that the classical dynamics in $\Omega^0$ are chaotic, we derive a semiclassical trace formula for each spectral component and show that their energy level statistics are the same as in standard Random Matrix ensembles. Depending on whether ${\alpha}$ is real, pseudo-real or complex, the spectrum has either Gaussian Orthogonal, Gaussian Symplectic or Gaussian Unitary types of statistics, respectively.Comment: 18 pages, 4 figure