Dynamics of Turing patterns under spatio-temporal forcing

We study, both theoretically and experimentally, the dynamical response of Turing patterns to a spatio-temporal forcing in the form of a travelling wave modulation of a control parameter. We show that from strictly spatial resonance, it is possible to induce new, generic dynamical behaviors, including temporally-modulated travelling waves and localized travelling soliton-like solutions. The latter make contact with the soliton solutions of P. Coullet Phys. Rev. Lett. {\bf 56}, 724 (1986) and provide a general framework which includes them. The stability diagram for the different propagating modes in the Lengyel-Epstein model is determined numerically. Direct observations of the predicted solutions in experiments carried out with light modulations in the photosensitive CDIMA reaction are also reported.Comment: 6 pages, 5 figure

N=1 gauge superpotentials from supergravity

We review the supergravity derivation of some non-perturbatively generated effective superpotentials for N=1 gauge theories. Specifically, we derive the Veneziano-Yankielowicz superpotential for pure N=1 Super Yang-Mills theory from the warped deformed conifold solution, and the Affleck-Dine-Seiberg superpotential for N=1 SQCD from a solution describing fractional D3-branes on a C^3 / Z_2 x Z_2 orbifold.Comment: LaTeX, iopart class, 8 pages, 3 figures. Contribution to the proceedings of the workshop of the RTN Network "The quantum structure of space-time and the geometric nature of fundamental interactions", Copenhagen, September 2003; v2: published version with minor clarification

Extending ballistic graphene FET lumped element models to diffusive devices

In this work, a modified, lumped element graphene field effect device model is presented. The model is based on the "Top-of-the-barrier" approach which is usually valid only for ballistic graphene nanotransistors. Proper modifications are introduced to extend the model's validity so that it accurately describes both ballistic and diffusive graphene devices. The model is compared to data already presented in the literature. It is shown that a good agreement is obtained for both nano-sized and large area graphene based channels. Accurate prediction of drain current and transconductance for both cases is obtained

Turing Instability in a Boundary-fed System

The formation of localized structures in the chlorine dioxide-idodine-malonic acid (CDIMA) reaction-diffusion system is investigated numerically using a realistic model of this system. We analyze the one-dimensional patterns formed along the gradients imposed by boundary feeds, and study their linear stability to symmetry-breaking perturbations (Turing instability) in the plane transverse to these gradients. We establish that an often-invoked simple local linear analysis which neglects longitudinal diffusion is inappropriate for predicting the linear stability of these patterns. Using a fully nonuniform analysis, we investigate the structure of the patterns formed along the gradients and their stability to transverse Turing pattern formation as a function of the values of two control parameters: the malonic acid feed concentration and the size of the reactor in the dimension along the gradients. The results from this investigation are compared with existing experiments.Comment: 41 pages, 18 figures, to be published in Physical Review

Squashed Giants: Bound States of Giant Gravitons

We consider giant gravitons in the maximally supersymmetric type IIB plane-wave, in the presence of a constant NSNS B-field background. We show that in response to the background B-field the giant graviton would take the shape of a deformed three-sphere, the size and shape of which depend on the B-field, and that the giant becomes classically unstable once the B-field is larger than a critical value B_{cr}. In particular, for the B-field which is (anti-)self-dual under the SO(4) isometry of the original giant S^3, the closed string metric is that of a round S^3, while the open string metric is a squashed three-sphere. The squashed giant can be interpreted as a bound state of a spherical three-brane and circular D-strings. We work out the spectrum of geometric fluctuations of the squashed giant and study its stability. We also comment on the gauge theory which lives on the brane (which is generically a noncommutative theory) and a possible dual gauge theory description of the deformed giant.Comment: Latex file, 32 pages, 6 .eps figures; v3: typos correcte

Reaction-Diffusion System in a Vesicle with Semi-Permeable Membrane

We study the Schloegl model in a vesicle with semi-permeable membrane. The diffusion constant takes a smaller value in the membrane region, which prevents the outflow of self-catalytic product. A nonequilibrium state is stably maintained inside of the vesicle. Nutrients are absorbed and waste materials are exhausted through the membrane by diffusion. It is interpreted as a model of primitive metabolism in a cell.Comment: 8 pages, 6 figure

Dynamical effects induced by long range activation in a nonequilibrium reaction-diffusion system

We both show experimentally and numerically that the time scales separation introduced by long range activation can induce oscillations and excitability in nonequilibrium reaction-diffusion systems that would otherwise only exhibit bistability. Namely, we show that the Chlorite-Tetrathionate reaction, where autocatalytic species diffuses faster than the substrates, the spatial bistability domain in the nonequilibrium phase diagram is extended with oscillatory and excitability domains. A simple model and a more realistic model qualitatively account for the observed behavior. The latter model provides quantitative agreement with the experiments.Comment: 19 pages + 9 figure

Provider-specific quality measurement for ERCP using natural language processing

Background and Aims Natural language processing (NLP) is an information retrieval technique that has been shown to accurately identify quality measures for colonoscopy. There are no systematic methods by which to track adherence to quality measures for ERCP, the highest risk endoscopic procedure widely used in practice. Our aim was to demonstrate the feasibility of using NLP to measure adherence to ERCP quality indicators across individual providers. Methods ERCPs performed by 6 providers at a single institution from 2006 to 2014 were identified. Quality measures were defined using society guidelines and from expert opinion, and then extracted using a combination of NLP and data mining (eg, ICD9-CM codes). Validation for each quality measure was performed by manual record review. Quality measures were grouped into preprocedure (5), intraprocedure (6), and postprocedure (2). NLP was evaluated using measures of precision and accuracy. Results A total of 23,674 ERCPs were analyzed (average patient age, 52.9 ± 17.8 years, 14,113 were women [59.6%]). Among 13 quality measures, precision of NLP ranged from 84% to 100% with intraprocedure measures having lower precision (84% for precut sphincterotomy). Accuracy of NLP ranged from 90% to 100% with intraprocedure measures having lower accuracy (90% for pancreatic stent placement). Conclusions NLP in conjunction with data mining facilitates individualized tracking of ERCP providers for quality metrics without the need for manual medical record review. Incorporation of these tools across multiple centers may permit tracking of ERCP quality measures through national registries

Supersymmetry Breaking from a Calabi-Yau Singularity

We conjecture a geometric criterion for determining whether supersymmetry is spontaneously broken in certain string backgrounds. These backgrounds contain wrapped branes at Calabi-Yau singularites with obstructions to deformation of the complex structure. We motivate our conjecture with a particular example: the $Y^{2,1}$ quiver gauge theory corresponding to a cone over the first del Pezzo surface, $dP_1$. This setup can be analyzed using ordinary supersymmetric field theory methods, where we find that gaugino condensation drives a deformation of the chiral ring which has no solutions. We expect this breaking to be a general feature of any theory of branes at a singularity with a smaller number of possible deformations than independent anomaly-free fractional branes.Comment: 32 pages, 6 figures, latex, v2: minor changes, refs adde

Phase Bubbles and Spatiotemporal Chaos in Granular Patterns

We use inelastic hard sphere molecular dynamics simulations and laboratory experiments to study patterns in vertically oscillated granular layers. The simulations and experiments reveal that {\em phase bubbles} spontaneously nucleate in the patterns when the container acceleration amplitude exceeds a critical value, about $7g$, where the pattern is approximately hexagonal, oscillating at one-fourth the driving frequency ($f/4$). A phase bubble is a localized region that oscillates with a phase opposite (differing by $\pi$) to that of the surrounding pattern; a localized phase shift is often called an {\em arching} in studies of two-dimensional systems. The simulations show that the formation of phase bubbles is triggered by undulation at the bottom of the layer on a large length scale compared to the wavelength of the pattern. Once formed, a phase bubble shrinks as if it had a surface tension, and disappears in tens to hundreds of cycles. We find that there is an oscillatory momentum transfer across a kink, and this shrinking is caused by a net collisional momentum inward across the boundary enclosing the bubble. At increasing acceleration amplitudes, the patterns evolve into randomly moving labyrinthian kinks (spatiotemporal chaos). We observe in the simulations that $f/3$ and $f/6$ subharmonic patterns emerge as primary instabilities, but that they are unstable to the undulation of the layer. Our experiments confirm the existence of transient $f/3$ and $f/6$ patterns.Comment: 6 pages, 12 figures, submitted to Phys. Rev. E on July 1st, 2001. for better quality figures, visit http://chaos.ph.utexas.edu/research/moo