Functional association between the nef gene product and gag-pol region of HIV-1

AbstractNef gene function is diverse among virus isolates of primate immunodeficiency viruses. We found differential effects of nef mutation on the virus replication between two HIV-1 clones, NL432 and LAI. The nef mutation in NL432 affected the infectivity more severely compared with that in LAI, although the Nef functions of both clones were comparable. Analysis with a series of chimeric viruses between NL432 and LAI revealed that the gag-pol region was responsible for the differential effect of nef mutation. The functional association between Nef and gag-pol suggested that one of the potential targets of Nef was located within the gag-pol region

Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays

<p>Abstract</p> <p>Background</p> <p>High-density oligonucleotide arrays are widely used for analysis of genome-wide expression and genetic variation. Affymetrix GeneChips – common high-density oligonucleotide arrays – contain perfect match (PM) and mismatch (MM) probes generated by changing a single nucleotide of the PMs, to estimate cross-hybridization. However, a fraction of MM probes exhibit larger signal intensities than PMs, when the difference in the amount of target specific hybridization between PM and MM probes is smaller than the variance in the amount of cross-hybridization. Thus, pairs of PM and MM probes with greater specificity for single nucleotide mismatches are desirable for accurate analysis.</p> <p>Results</p> <p>To investigate the specificity for single nucleotide mismatches, we designed a custom array with probes of different length (14- to 25-mer) tethered to the surface of the array and all possible single nucleotide mismatches, and hybridized artificially synthesized 25-mer oligodeoxyribonucleotides as targets in bulk solution to avoid the effects of cross-hybridization. The results indicated the finite availability of target molecules as the probe length increases. Due to this effect, the sequence specificity of the longer probes decreases, and this was also confirmed even under the usual background conditions for transcriptome analysis.</p> <p>Conclusion</p> <p>Our study suggests that the optimal probe length for specificity is 19–21-mer. This conclusion will assist in improvement of microarray design for both transcriptome analysis and mutation screening.</p

family members and health-related behaviors

The aim of this study was to clarify the associations of family members living together with health-related behaviors in Japanese young workers. The participants were 300 men and women aged 20-39 years in 2015 who had a job. A web-based self-administered questionnaire on status of partnering and parenting, number of family members living together, dietary habits, drinking habit, smoking habit, self-rated health, employment status, working time and commuting time was conducted through Internet. Multiple logistic regression analysis and general linear models were used to assess the association of family members living together with health-related behaviors. The multivariate-adjusted odds ratio (95% confidence interval, p-value) for current drinking in unmarried participants living with their parents compared to unmarried participants living alone was 0.35 (0.13-0.93, p=0.036). The adjusted means of frequency of breakfast skipping and frequency of eating out showed a trend for inverse associations with the presence of a partner and children. However, those associations disappeared after adjustment for age of youngest child. The findings suggest that the presence of parents might affect drinking behavior and that age of youngest child living together might affect the frequency of breakfast skipping in young Japanese workers

セイネン ノ シャカイテキ イツダツ コウイ ケイコウ ト クウキョカン ニンチテキ ワイキョク ノ カンレン

Recently, crime and delinquency have been changing during adolescence.It is suggested that an obscurity of reality and fiction in the present advanced information society and a feeling of emptiness from anxiety of uneasiness are causes.Nevertheless, there has never been an empirical study providing evidence towards those claims. This study indicates the relation of socially delinquent and emptiness among college students.The socially delinquent was suggested to concerns attitudes of disvalue to the socially delinquent and cognitive distorted(Yoshizawa & Yoshida,2004).Thus,this study tested the relationships between emptiness,cognitive distortion,and social delinquency. Consequently,the suggested model was different in men and women.In men, a direct effect towards apathy and an indirect effect of cognitive distortion to the socially delinquent were found.In addition,a mediating effect of egocentricity of cognitive distortion mediating the association between emptiness from anxiety of uneasiness and the socially delinquent was indicated.In women,a direct effect towards an emptiness from an anxiety of uneasiness to social delinquency and a mediating effect towards a denigrating fallaciousness of cognitive distortion mediating the association between loneliness of emptiness and socially delinquent was indicated

Combined effects of electric toothbrushing and dentifrice on artificial stain removal : an in vitro study

This in vitro study aimed to clarify the combined effect of electric toothbrushing and dentifrice on the removal of artificial stain. Twenty-five bovine incisors were cut at the cervix and the crown was embedded in auto-cured acrylic resin. Specimens were abraded using #240 SiC paper to obtain a flat enamel surface, and 20 specimens were treated with 10% citric acid / 3% ferric chloride solution followed by 1% tannic acid solution to produce surface staining. They were divided into four groups: 1) brushing with an electric toothbrush and whitening dentifrice (group S+B); 2) brushing with an electric toothbrush and fluoride dentifrice (group S+C); 3) brushing with an electric toothbrush and no dentifrice (group S); and 4) no brushing (control group). The remaining five specimens were used as a baseline. Color values (L*, a*, and b* were measured before brushing (0 min), and at 1 min, 5 min, 10 min, and 20 min using a microscopic area spectrophotometer. The color change (?E) was calculated by subtracting the baseline values from the final color values obtained at each time point. The data were statistically analyzed using two-way repeated-measures analysis of variance and Tukey?s honest significant difference test as a post hoc test (p0.05). Groups S+B and S+C demonstrated greater ?E values than group S. The combination of electric toothbrushing and dentifrice removed the artificial stain more effectively than brushing without dentifrice. However, the stain removal was limited. The two dentifrices evaluated in this study exhibited similar stain removal effects

Effect of composition and stereoregularity on phase-transition behavior of aqueous N-ethylacrylamide/N-n-propylacrylamide copolymer solutions

Radical copolymerizations of N-ethylacrylamide and N-n-propylacrylamide (NNPAAm) at various ratios were carried out at -40°C, in toluene in the presence of 3-methyl-3-pentanol, or in N-ethylacetamide. Syndiotactic-rich copolymers with racemo diad contents of 67.1–70.2%, and isotactic-rich copolymers with meso diad contents of 60.9–64.5% were prepared. Syndiotactic-rich copolymers with NNPAAm compositions of ≥92.9 mol% exhibited large hystereses in the phase-transition temperatures of their aqueous solutions. Isotactic-rich copolymers with NNPAAm compositions of 39.2–67.6 mol% exhibited large hystereses in the phase-transition temperatures of their aqueous solutions. Those of composition >67.6 mol% were insoluble in water. Stereosequence analysis suggested that isotactic sequences favored intramolecular hydrogen bonding between contiguous NNPAAm units, more than syndiotactic sequences. Enhanced intramolecular hydrogen bonding in isotactic sequences was responsible for the large hystereses and insolubility of isotactic-rich copolymers with high NNPAAm compositions