Crystalline Field Effects on Magnetic and Thermodynamic properties of a Ferrimagnetic Centered Rectangular Structure

The magnetic properties and phase diagrams of the mixed spin Ising model, with spins S=1 and {\sigma}=1/2 on a centered rectangular structure, have been investigated using Monte Carlo simulations based on the Metropolis algorithm. Every spin at one lattice site has four nearest-neighbor spins of the same type and four of the other type. We have assumed ferromagnetic interaction between the same spins type, antiferromagnetic for different spin types. An additional single-site crystal field term on the S=1 site was considered. We have shown that the crystal field enhances the existence of the compensation behavior of the system. In addition, the effects of the crystal field and exchange coupling on the magnetic properties and phase diagrams of the system have been studied. Finally, the magnetic hysteresis cycles of the system for several values of the crystal field have been found.Comment: 19 pages, 12 figures. arXiv admin note: text overlap with arXiv:2012.1092

Functional variants regulating LGALS1 (Galectin 1) expression affect human susceptibility to influenza A(H7N9)

The fatality of avian influenza A(H7N9) infection in humans was over 30%. To identify human genetic susceptibility to A(H7N9) infection, we performed a genome-wide association study (GWAS) involving 102 A(H7N9) patients and 106 heavily-exposed healthy poultry workers, a sample size critically restricted by the small number of human A(H7N9) cases. To tackle the stringent significance cutoff of GWAS, we utilized an artificial imputation program SnipSnip to improve the association signals. In single-SNP analysis, one of the top SNPs was rs13057866 of LGALS1. The artificial imputation (AI) identified three non-genotyped causal variants, which can be represented by three anchor/partner SNP pairs rs13057866/rs9622682 (AI P = 1.81 × 10-7), rs4820294/rs2899292 (2.13 × 10-7) and rs62236673/rs2899292 (4.25 × 10-7) respectively. Haplotype analysis of rs4820294 and rs2899292 could simulate the signal of a causal variant. The rs4820294/rs2899292 haplotype GG, in association with protection from A(H7N9) infection (OR = 0.26, P = 5.92 × 10-7) correlated to significantly higher levels of LGALS1 mRNA (P = 0.050) and protein expression (P = 0.025) in lymphoblast cell lines. Additionally, rs4820294 was mapped as an eQTL in human primary monocytes and lung tissues. In conclusion, functional variants of LGALS1 causing the expression variations are contributable to the differential susceptibility to influenza A(H7N9).link_to_OA_fulltex

Dynamics of Duffing-Holmes oscillator with fractional order nonlinearity

In this work, the dynamics of Duffing-Holmes oscillator with fractional order nonlinearity is explored. Basically, a fractional spatial derivative is introduced to the cubic term, and the order of the derivative  α is varied between zero and two. The evolution of the dynamics of the system from nonlinear behavior to linear behavior is investigated using multiple tools such as phase portraits, Poincare maps, and bifurcation diagrams. We have demonstrated that as α increases the system can alternate between chaotic and periodic states depending on the parameters setting. However, the overall impact transforms the system into simpler dynamics and eventually causes the chaotic regions to fade out regardless of the system settings. The largest α at which the system still exhibits chaotic behavior is estimated to be around 1.17 and for transient chaos is estimated to be 1.25

Nucleation Rates of Methanol Using the SAFT-0 Equation of State

Classical and nonclassical calculations of nucleation rates are presented for methanol, an associating vapor system. The calculations use an equation of state (EOS) that accounts for the effects of molecular association based on the statistical association fluid theory (SAFT). Two forms of classical nucleation theory (CNT) were studied: a Gibbsian form known as the P-form and the standard or S-form. CNT P-form calculations and nonclassical gradient theory (GT) calculations were made using the SAFT-0 EOS. Calculated rates were compared to the experimental rates of Strey, et al. [J. Chem. Phys. 1986, 84, 2325-2335]. Very little difference was found between the two forms of CNT for either the temperature (T) or supersaturation (S) dependence of the rates. Nucleation rates based on GT showed improved T and S dependence compared to CNT. The GT rates were also improved by factors of 100-1000 compared to CNT. Despite these improvements, GT does not describe the reported T and S dependence of the nucleation rates. To explore this further, the GT and experimental rates were analyzed using Hale\u27s scaled model [J. Chem. Phys. 2005, 122, 204 509]. This analysis reveals an inconsistency between the predictions of GT, which scale relatively well, and the experimental data, which do not scale. It also shows that the measured rate data have an anomalous T and S dependence. A likely source of this anomaly is the inadequate thermodynamic data base for small cluster properties that was used originally to correct the raw rate data for the effects of association

Protective effect of club cell secretory protein (CC-16) on COPD risk and progression:a Mendelian randomisation study

BACKGROUND: The anti-inflammatory pneumoprotein club cell secretory protein-16 (CC-16) is associated with the clinical expression of chronic obstructive pulmonary disease (COPD). We aimed to determine if there is a causal effect of serum CC-16 level on the risk of having COPD and/or its progression using Mendelian randomisation (MR) analysis. METHODS: We performed a genome-wide association meta-analysis for serum CC-16 in two COPD cohorts (Lung Health Study (LHS), n=3850 and ECLIPSE, n=1702). We then used the CC-16-associated single-nucleotide polymorphisms (SNPs) as instrumental variables in MR analysis to identify a causal effect of serum CC-16 on 'COPD risk' (ie, case status in the International COPD Genetics Consortium/UK-Biobank dataset; n=35 735 COPD cases, n=222 076 controls) and 'COPD progression' (ie, annual change in forced expiratory volume in 1 s in LHS and ECLIPSE). We also determined the associations between SNPs associated with CC-16 and gene expression using n=1111 lung tissue samples from the Lung Expression Quantitative Trait Locus Study. RESULTS: We identified seven SNPs independently associated (p<5×10-8) with serum CC-16 levels; six of these were novel. MR analysis suggested a protective causal effect of increased serum CC-16 on COPD risk (MR estimate (SE) -0.11 (0.04), p=0.008) and progression (LHS only, MR estimate (SE) 7.40 (3.28), p=0.02). Five of the SNPs were also associated with gene expression in lung tissue (at false discovery rate <0.1) of several genes, including the CC-16-encoding gene SCGB1A1. CONCLUSION: We have identified several novel genetic variants associated with serum CC-16 level in COPD cohorts. These genetic associations suggest a potential causal effect of serum CC-16 on the risk of having COPD and its progression, the biological basis of which warrants further investigation

Coronary artery disease polygenic risk score identifies patients at higher risk for recurrent cardiovascular events in the CANTOS Trial

No formal abstract in format we plan to submit to journal (a short report). Informally, the work presented here adds to a body of evidence that shows how polygenic risk scores (PRS) for coronary artery disease (CAD) can be used to inform on patient's disease severity, disease progression, and potential for treatment response stratification. Key results include, patients in highest tertile PRS have a higher CAD disease burden at baseline (measured by number of myocardial infractions at trail start), progress faster in CAD (measured by time to first major adverse cardiovascular event, MACE), and may respond better to Canakinumab therapy at the highest dose of 300mg