Revealing sources of biological methane production in boreal upland forests

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Revealing sources of CH4 in a boreal upland forest

201

Feedback in the Antennae Galaxies (NGC 4038/9): I. High-Resolution Infrared Spectroscopy of Winds from Super Star Clusters

We present high-resolution (R ~ 24,600) near-IR spectroscopy of the youngest super star clusters (SSCs) in the prototypical starburst merger, the Antennae Galaxies. These SSCs are young (3-7 Myr old) and massive (10^5 - 10^7 M_sun for a Kroupa IMF) and their spectra are characterized by broad, extended Br-gamma emission, so we refer to them as emission-line clusters (ELCs) to distinguish them from older SSCs. The Brgamma lines of most ELCs have supersonic widths (60-110 km/s FWHM) and non-Gaussian wings whose velocities exceed the clusters' escape velocities. This high-velocity unbound gas is flowing out in winds that are powered by the clusters' massive O and W-R stars over the course of at least several crossing times. The large sizes of some ELCs relative to those of older SSCs may be due to expansion caused by these outflows; many of the ELCs may not survive as bound stellar systems, but rather dissipate rapidly into the field population. The observed tendency of older ELCs to be more compact than young ones is consistent with the preferential survival of the most concentrated clusters at a given age.Comment: Accepted to Ap

Methane emissions from the forest floor and woody plants in a boreal upland forest

201

Exact Fermi-edge singularity exponent in a Luttinger liquid

We report the exact calculation of the Fermi-edge singularity exponent for correlated electrons in one dimension (Luttinger liquid). Focusing on the special interaction parameter g=1/2, the asymptotic long-time behavior can be obtained using the Wiener-Hopf method. The result confirms the previous assumption of an open boundary fixed point. In addition, a dynamic k-channel Kondo impurity is studied via Abelian bosonization for k=2 and k=4. It is shown that the corresponding orthogonality exponents are related to the orthogonality exponent in a Luttinger liquid.Comment: 8 Pages RevTeX, no figure

The Mid-IR Properties of Starburst Galaxies from Spitzer-IRS Spectroscopy

We present 5-38um mid-infrared spectra at a spectral resolution of R~65-130 of a large sample of 22 starburst nuclei taken with the Infrared Spectrograph IRS on board the Spitzer Space Telescope. The spectra show a vast range in starburst SEDs. The silicate absorption ranges from essentially no absorption to heavily obscured systems with an optical depth of tau(9.8um)~5. The spectral slopes can be used to discriminate between starburst and AGN powered sources. The monochromatic continuum fluxes at 15um and 30um enable a remarkably accurate estimate of the total infrared luminosity of the starburst. We find that the PAH equivalent width is independent of the total starburst luminosity L_IR as both continuum and PAH feature scale proportionally. However, the luminosity of the 6.2um feature scales with L_IR and can be used to approximate the total infrared luminosity of the starburst. Although our starburst sample covers about a factor of ten difference in the [NeIII]/[NeII] ratio, we found no systematic correlation between the radiation field hardness and the PAH equivalent width or the 7.7um/11.3um PAH ratio. These results are based on spatially integrated diagnostics over an entire starburst region, and local variations may be ``averaged out''. It is presumably due to this effect that unresolved starburst nuclei with significantly different global properties appear spectrally as rather similar members of one class of objects.Comment: 22 pages, accepted for publication in ApJ, a high-resolution version is available from http://www.strw.leidenuniv.nl/~brandl/IRS_starbursts.pd

La intertextualidad como método de análisis filosófico

Ombrotrophic peatlands are a recognized global carbon reservoir. Without restoration and peat regrowth, harvested peatlands are dramatically altered, impairing its carbon sink function, with consequences for methane turnover. Previous studies determined the impact of commercial mining on the peat physico-chemical properties, and the effects on methane turnover. However, the response of the underlying microbial communities catalyzing methane production and oxidation have so far received little attention. We hypothesize that with the return of Sphagnum post-harvest, methane turnover potentials and the corresponding microbial communities will converge in a natural and restored peatland. To address our hypothesis, we determined the potential methane production and oxidation rates in a natural (as a reference), actively mined, abandoned, and restored peatland over two consecutive years. In all sites, the methanogenic and methanotrophic population size were enumerated using qPCR assays targeting the mcrA and pmoA genes, respectively. Shifts in the community composition was determined using Illumina MiSeq sequencing of the mcrA gene, and a pmoA-based t-RFLP analysis, complemented by cloning and sequence analysis of the mmoX gene. Peat mining adversely affected methane turnover potentials, but rates recovered in the restored site. The recovery in potential activity was reflected in the methanogenic and methanotrophic abundances. However, the microbial community composition was altered, more pronounced for the methanotrophs. Overall, we observed a lag between the recovery of the methanogenic/methanotrophic activity and the return of the corresponding microbial communities, suggesting a longer duration (>15 years) is needed to reverse mining-induced effects on the methane-cycling microbial communities

Photoluminescence investigations of 2D hole Landau levels in p-type single Al_{x}Ga_{1-x}As/GaAs heterostructures

We study the energy structure of two-dimensional holes in p-type single Al_{1-x}Ga_{x}As/GaAs heterojunctions under a perpendicular magnetic field. Photoluminescence measurments with low densities of excitation power reveal rich spectra containing both free and bound-carrier transitions. The experimental results are compared with energies of valence-subband Landau levels calculated using a new numerical procedure and a good agreement is achieved. Additional lines observed in the energy range of free-carrier recombinations are attributed to excitonic transitions. We also consider the role of many-body effects in photoluminescence spectra.Comment: 13 pages, 10 figures, accepted to Physical Review

Identifying Ligand Binding Conformations of the β2-Adrenergic Receptor by Using Its Agonists as Computational Probes

Recently available G-protein coupled receptor (GPCR) structures and biophysical studies suggest that the difference between the effects of various agonists and antagonists cannot be explained by single structures alone, but rather that the conformational ensembles of the proteins need to be considered. Here we use an elastic network model-guided molecular dynamics simulation protocol to generate an ensemble of conformers of a prototypical GPCR, β2-adrenergic receptor (β2AR). The resulting conformers are clustered into groups based on the conformations of the ligand binding site, and distinct conformers from each group are assessed for their binding to known agonists of β2AR. We show that the select ligands bind preferentially to different predicted conformers of β2AR, and identify a role of β2AR extracellular region as an allosteric binding site for larger drugs such as salmeterol. Thus, drugs and ligands can be used as "computational probes" to systematically identify protein conformers with likely biological significance. © 2012 Isin et al

The Dune framework: Basic concepts and recent developments

This paper presents the basic concepts and the module structure of the Distributed and Unified Numerics Environment and reflects on recent developments and general changes that happened since the release of the first Dune version in 2007 and the main papers describing that state Bastian etal. (2008a, 2008b). This discussion is accompanied with a description of various advanced features, such as coupling of domains and cut cells, grid modifications such as adaptation and moving domains, high order discretizations and node level performance, non-smooth multigrid methods, and multiscale methods. A brief discussion on current and future development directions of the framework concludes the paper