Effects of crude humin and compost produced from selected waste on Zea mays growth, nutrient uptake and nutrient use efficiency

Waste from oil palm plantations, paddy fields, sawn timber and poultries are substantial. Inappropriate disposal of these wastes can cause environmental problems such as air and land pollutions. The objective of this study was to determine the effect of crude humin and compost produced from rice straw, rice husk, sawdust, and oil palm empty fruit bunch on growth, dry matter production, nutrient uptake and nutrient use efficiency of maize. Standard procedures were used to determine soil pH, total nitrogen, exchangeable ammonium, available nitrate, exchangeable phosphorus, cations, organic matter, total organic carbon and cation exchange capacity before and after planting. The plants were measured for diameter and height at tasselling stage prior to harvest. Dry matter production, nutrient uptake and nutrient use efficiency were also determined. Application of sawdust compost (T8) significantly increased maize plant diameter, height, dry matter production, and N, P and K uptake and use efficiency. It also reduced N, P and K based chemical fertilizer up to 90%. Application of humin and other selected waste composts (T6, T7 and T9) could be used as alternative for chemical fertilizers and their similar effects on maize plants.Keywords: Crude humin, Zea mays, nutrient uptake, nutrient use efficiencyAfrican Journal of Biotechnology Vol. 12(13), pp. 1500-150

Physico-chemical properties of indigenous micro organism-composts and humic acid prepared from selected agro-industrial residues

Paddy husk (PH) and corn stalks (CS) residues are managed through burning. Besides contributing to environmental pollution, burning causes loss of vegetation cover, erosion, run off and loss of organic matter. In order to minimize this problem, a study was conducted to manage PH and CS residues through composting and to determine the physical and chemical properties of different composts and humic acid extracted from the final product. The study had six treatments namely: (T1) indigenous microorganisms (IMOIV)Steamed white rice (SWR)(30%)+PH (40%)+Chicken Dung (30%), (T2) SWR (30%)+CS (40%)+Chicken Dung (30%), (T3) IMOIVAerated Fish Pond Water (AFPW)(30%)+Paddy husk (40%)+Chicken Dung(30%), (T4) IMOIV AFPW (30%)+CS (40%)+Chicken Dung(30%), (T5) IMOIVKitchen Waste (KW)(30%)+PH (40%)+Chicken Dung (30%) and (T6) IMOIV KW (30%)+CS (40%)+Chicken Dung (30%). Composting was conducted in a white polystyrene box with a size of 30 x 15 x 25 cm. The composts produced in this study were analyzed for C:N and C:P ratio, pH (H2O and KCl), nutrients, heavy metals, organic carbon, organic matter, ash, cation exchange capacity (CEC), humic acid (HAs) and total microbial count. The HAs were evaluated for elemental composition, acidic functional groups, E4/E6 ratio and spectral characteristics using standard procedures. Results show that all IMO-composts were granular, dark brown in colour without foul odour and attained an ambient temperature at 34 days of composting indicating the stable nature of the composts. The number of bacteria and filamentous fungi involved during composting decreased at the end of the all treatments. The E4/E6, acidic functional groups; carboxyl-COOH, phenolic-OH and total acidity of the compost were consistent with the standard range. IMO-compost from CS had better quality (chemical characteristics) compared to that of paddy husk. High quality compost could be produced from CS.Keywords: Paddy husk (PH), corn stalks (CS), indigenous microorganisms (IMO)-compost, humid acid (HA

A National Point‐of‐Care Ultrasound Competition for Medical Students

Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/146850/1/jum14670_am.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/146850/2/jum14670.pd

Computational Cancer Biology: An Evolutionary Perspective

ISSN:1553-734XISSN:1553-735

Cell cycle regulation of embryonic stem cells and mouse embryonic fibroblasts lacking functional Pax7

The transcription factor Pax7 plays a key role during embryonic myogenesis and in adult organisms in that it sustains the proper function of satellite cells, which serve as adult skeletal muscle stem cells. Recently we have shown that lack of Pax7 does not prevent the myogenic differentiation of pluripotent stem cells. In the current work we show that the absence of functional Pax7 in differentiating embryonic stem cells modulates cell cycle facilitating their proliferation. Surprisingly, deregulation of Pax7 function also positively impacts at the proliferation of mouse embryonic fibroblasts. Such phenotypes seem to be executed by modulating the expression of positive cell cycle regulators, such as cyclin E

Influence of Silica Nano-Additives on Performance and Emission Characteristics of Soybean Biodiesel Fuelled Diesel Engine

The present study examines the effect of silicon dioxide (SiO2) nano-additives on the performance and emission characteristics of a diesel engine fuelled with soybean biodiesel. Soybean biofuel was prepared using the transesterification process. The morphology of nano-additives was studied using scanning electron microscopy (SEM), X-ray diffraction (XRD) and energy-dispersive X-ray spectroscopy (EDS). The Ultrasonication process was used for the homogeneous blending of nano-additives with biodiesel, while surfactant was used for the stabilisation of nano-additives. The physicochemical properties of pure and blended fuel samples were measured as per ASTM standards. The performance and emissions characteristics of different fuel samples were measured at different loading conditions. It was found that the brake thermal efficiency (BTE) and brake specific fuel consumption (BSFC) increased by 3.48–6.39% and 5.81–9.88%, respectively, with the addition of SiO2 nano-additives. The carbon monoxide (CO), hydrocarbon (HC) and smoke emissions for nano-additive added blends were decreased by 1.9–17.5%, 20.56–27.5% and 10.16–23.54% compared to SBME25 fuel blends.</jats:p

HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures.

Approximately 1-5% of breast cancers are attributed to inherited mutations in BRCA1 or BRCA2 and are selectively sensitive to poly(ADP-ribose) polymerase (PARP) inhibitors. In other cancer types, germline and/or somatic mutations in BRCA1 and/or BRCA2 (BRCA1/BRCA2) also confer selective sensitivity to PARP inhibitors. Thus, assays to detect BRCA1/BRCA2-deficient tumors have been sought. Recently, somatic substitution, insertion/deletion and rearrangement patterns, or 'mutational signatures', were associated with BRCA1/BRCA2 dysfunction. Herein we used a lasso logistic regression model to identify six distinguishing mutational signatures predictive of BRCA1/BRCA2 deficiency. A weighted model called HRDetect was developed to accurately detect BRCA1/BRCA2-deficient samples. HRDetect identifies BRCA1/BRCA2-deficient tumors with 98.7% sensitivity (area under the curve (AUC) = 0.98). Application of this model in a cohort of 560 individuals with breast cancer, of whom 22 were known to carry a germline BRCA1 or BRCA2 mutation, allowed us to identify an additional 22 tumors with somatic loss of BRCA1 or BRCA2 and 47 tumors with functional BRCA1/BRCA2 deficiency where no mutation was detected. We validated HRDetect on independent cohorts of breast, ovarian and pancreatic cancers and demonstrated its efficacy in alternative sequencing strategies. Integrating all of the classes of mutational signatures thus reveals a larger proportion of individuals with breast cancer harboring BRCA1/BRCA2 deficiency (up to 22%) than hitherto appreciated (∼1-5%) who could have selective therapeutic sensitivity to PARP inhibition

A somatic-mutational process recurrently duplicates germline susceptibility loci and tissue-specific super-enhancers in breast cancers

Somatic rearrangements contribute to the mutagenized landscape of cancer genomes. Here, we systematically interrogated rearrangements in 560 breast cancers by using a piecewise constant fitting approach. We identified 33 hotspots of large (>100 kb) tandem duplications, a mutational signature associated with homologous-recombination-repair deficiency. Notably, these tandem-duplication hotspots were enriched in breast cancer germline susceptibility loci (odds ratio (OR) = 4.28) and breast-specific 'super-enhancer' regulatory elements (OR = 3.54). These hotspots may be sites of selective susceptibility to double-strand-break damage due to high transcriptional activity or, through incrementally increasing copy number, may be sites of secondary selective pressure. The transcriptomic consequences ranged from strong individual oncogene effects to weak but quantifiable multigene expression effects. We thus present a somatic-rearrangement mutational process affecting coding sequences and noncoding regulatory elements and contributing a continuum of driver consequences, from modest to strong effects, thereby supporting a polygenic model of cancer development.DG is supported by the EU-FP7-SUPPRESSTEM project. SN-Z is funded by a Wellcome Trust Intermediate Fellowship (WT100183MA) and is a Wellcome Beit Fellow. For more information, please visit the publisher's website

Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis.

Cancer genome sequencing studies have identified numerous driver genes, but the relative timing of mutations in carcinogenesis remains unclear. The gradual progression from premalignant Barrett's esophagus to esophageal adenocarcinoma (EAC) provides an ideal model to study the ordering of somatic mutations. We identified recurrently mutated genes and assessed clonal structure using whole-genome sequencing and amplicon resequencing of 112 EACs. We next screened a cohort of 109 biopsies from 2 key transition points in the development of malignancy: benign metaplastic never-dysplastic Barrett's esophagus (NDBE; n=66) and high-grade dysplasia (HGD; n=43). Unexpectedly, the majority of recurrently mutated genes in EAC were also mutated in NDBE. Only TP53 and SMAD4 mutations occurred in a stage-specific manner, confined to HGD and EAC, respectively. Finally, we applied this knowledge to identify high-risk Barrett's esophagus in a new non-endoscopic test. In conclusion, mutations in EAC driver genes generally occur exceptionally early in disease development with profound implications for diagnostic and therapeutic strategies

Whole-genome sequencing reveals clinically relevant insights into the aetiology of familial breast cancers.

BACKGROUND: Whole-genome sequencing (WGS) is a powerful method for revealing the diversity and complexity of the somatic mutation burden of tumours. Here, we investigated the utility of tumour and matched germline WGS for understanding aetiology and treatment opportunities for high-risk individuals with familial breast cancer. PATIENTS AND METHODS: We carried out WGS on 78 paired germline and tumour DNA samples from individuals carrying pathogenic variants in BRCA1 (n = 26) or BRCA2 (n = 22) or from non-carriers (non-BRCA1/2; n = 30). RESULTS: Matched germline/tumour WGS and somatic mutational signature analysis revealed patients with unreported, dual pathogenic germline variants in cancer risk genes (BRCA1/BRCA2; BRCA1/MUTYH). The strategy identified that 100% of tumours from BRCA1 carriers and 91% of tumours from BRCA2 carriers exhibited biallelic inactivation of the respective gene, together with somatic mutational signatures suggestive of a functional deficiency in homologous recombination. A set of non-BRCA1/2 tumours also had somatic signatures indicative of BRCA-deficiency, including tumours with BRCA1 promoter methylation, and tumours from carriers of a PALB2 pathogenic germline variant and a BRCA2 variant of uncertain significance. A subset of 13 non-BRCA1/2 tumours from early onset cases were BRCA-proficient, yet displayed complex clustered structural rearrangements associated with the amplification of oncogenes and pathogenic germline variants in TP53, ATM and CHEK2. CONCLUSIONS: Our study highlights the role that WGS of matched germline/tumour DNA and the somatic mutational signatures can play in the discovery of pathogenic germline variants and for providing supporting evidence for variant pathogenicity. WGS-derived signatures were more robust than germline status and other genomic predictors of homologous recombination deficiency, thus impacting the selection of platinum-based or PARP inhibitor therapy. In this first examination of non-BRCA1/2 tumours by WGS, we illustrate the considerable heterogeneity of these tumour genomes and highlight that complex genomic rearrangements may drive tumourigenesis in a subset of cases