Roughness-Induced Wetting

We investigate theoretically the possibility of a wetting transition induced by geometric roughness of a solid substrate for the case where the flat substrate does not show a wetting layer. Our approach makes use of a novel closed-form expression which relates the interaction between two sinusoidally modulated interfaces to the interaction between two flat interfaces. Within the harmonic approximation, we find that roughness-induced wetting is indeed possible if the substrate roughness, quantified by the substrate surface area, exceeds a certain threshold. In addition, the molecular interactions between the substrate and the wetting substance have to satisfy several conditions. These results are expressed in terms of a lower bound on the wetting potential for a flat substrate in order for roughness-induced wetting to occur. This lower bound has the following properties: A minimum is present at zero or very small separation between the two interfaces, as characteristic for the non-wetting situation in the flat case. Most importantly, the wetting potential needs to have a pronounced maximum at a separation comparable to the amplitude of the substrate roughness. These findings are in agreement with the experimental observation of roughness-induced surface premelting at a glass-ice interface as well as the calculation of the dispersion interaction for the corresponding glass-water-ice system.Comment: 17 pages, 8 figure

Theory for RNA folding, stretching, and melting including loops and salt

Secondary structure formation of nucleic acids strongly depends on salt concentration and temperature. We develop a theory for RNA folding that correctly accounts for sequence effects, the entropic contributions associated with loop formation, and salt effects. Using an iterative expression for the partition function that neglects pseudoknots, we calculate folding free energies and minimum free energy configurations based on the experimentally derived base pairing free energies. The configurational entropy of loop formation is modeled by the asymptotic expression -c ln m, where m is the length of the loop and c the loop exponent, which is an adjustable constant. Salt effects enter in two ways: first, we derive salt induced modifications of the free energy parameters for describing base pairing and, second, we include the electrostatic free energy for loop formation. Both effects are modeled on the Debye-Hueckel level including counterion condensation. We validate our theory for two different RNA sequences: For tRNA-phe, the resultant heat capacity curves for thermal denaturation at various salt concentrations accurately reproduce experimental results. For the P5ab RNA hairpin, we derive the global phase diagram in the three-dimensional space spanned by temperature, stretching force, and salt concentration and obtain good agreement with the experimentally determined critical unfolding force. We show that for a proper description of RNA melting and stretching, both salt and loop entropy effects are needed.Comment: 12 pages, 9 figures, accepted for publication in Biophysical Journa

Global cross-over dynamics of single semiflexible polymers

We present a mean-field dynamical theory for single semiflexible polymers which can precisely capture, without fitting parameters, recent fluorescence correlation spectroscopy results on single monomer kinetics of DNA strands in solution. Our approach works globally, covering three decades of strand length and five decades of time: it includes the complex cross-overs occurring between stiffness-dominated and flexible bending modes, along with larger-scale rotational and center-of-mass motion. The accuracy of the theory stems in part from long-range hydrodynamic coupling between the monomers, which makes a mean-field description more realistic. Its validity extends even to short, stiff fragments, where we also test the theory through Brownian hydrodynamics simulations.Comment: 6 pages, 5 figures; updated with minor changes to reflect published versio

Pulling adsorbed polymers from surfaces with the AFM: stick versus slip, peeling versus gliding

We consider the response of an adsorbed polymer that is pulled by an AFM within a simple geometric framework. We separately consider the cases of i) fixed polymer-surface contact point, ii) sticky case where the polymer is peeled off from the substrate, and iii) slippery case where the polymer glides over the surface. The resultant behavior depends on the value of the surface friction coefficient and the adsorption strength. Our resultant force profiles in principle allow to extract both from non-equilibrium force-spectroscopic data.Comment: 6 pages, 3 figures; accepted for publication in Europhys. Lett., http://www.edpsciences.org/journal/index.cfm?edpsname=ep

Strong-Coupling Theory for Counter-Ion Distributions

The Poisson-Boltzmann approach gives asymptotically exact counter-ion density profiles around charged objects in the weak-coupling limit of low valency and high temperature. In this paper we derive, using field-theoretic methods, a theory which becomes exact in the opposite limit of strong coupling. Formally, it corresponds to a standard virial expansion. Long-range divergences, which render the virial expansion intractable for homogeneous bulk systems, are shown to be renormalizable for the case of inhomogeneous distribution functions by a systematic expansion in inverse powers of the coupling parameter. For a planar charged wall, our analytical results compare quantitatively with extensive Monte-Carlo simulations.Comment: 7 pages, 3 figures; to appear in Europhys. Let

Adsorption and Depletion of Polyelectrolytes from Charged Surfaces

Mean-field theory and scaling arguments are presented to model polyelectrolyte adsorption from semi-dilute solutions onto charged surfaces. Using numerical solutions of the mean-field equations, we show that adsorption exists only for highly charged polyelectrolytes in low salt solutions. Simple scaling laws for the width of the adsorbed layer and the amount of adsorbed polyelectrolyte are obtained. In other situations the polyelectrolyte chains will deplete from the surface. For fixed surface potential conditions, the salt concentration at the adsorption--depletion crossover scales as the product of the charged fraction of the polyelectrolyte f and the surface potential, while for a fixed surface charge density, \sigma, it scales as \sigma^{2/3}f^{2/3}, in agreement with single-chain results.Comment: 12 pages, 8 figures, final version to be published in J. Chem. Phys. 200

Attraction of like-charged macroions in the strong-coupling limit

Like-charged macroions attract each other as a result of strong electrostatic correlations in the presence of multivalent counterions or at low temperatures. We investigate the effective electrostatic interaction between i) two like-charged rods and ii) two like-charged spheres using the recently introduced strong-coupling theory, which becomes asymptotically exact in the limit of large coupling parameter (i.e. for large counterion valency, low temperature, or high surface charge density on macroions). Since we deal with curved surfaces, an additional parameter, referred to as Manning parameter, is introduced, which measures the ratio between the radius of curvature of macroions to the Gouy-Chapman length and controls the counterion-condensation process that directly affects the effective interactions. For sufficiently large Manning parameters (weakly-curved surfaces), we find a strong long-ranged attraction between two macroions that form a closely-packed bound state with small surface-to-surface separation of the order of the counterion diameter in agreement with recent simulations. For small Manning parameters (highly-curved surfaces), on the other hand, the equilibrium separation increases and the macroions unbind from each other as the confinement volume increases to infinity. This occurs via a continuous universal unbinding transition for two charged rods at a threshold Manning parameter of 2/3, while the transition is discontinuous for spheres because of a pronounced potential barrier at intermediate distances.Comment: 16 pages, 10 figure