Time-reversal symmetric Kitaev model and topological superconductor in two dimensions

A time-reversal invariant Kitaev-type model is introduced in which spins (Dirac matrices) on the square lattice interact via anisotropic nearest-neighbor and next-nearest-neighbor exchange interactions. The model is exactly solved by mapping it onto a tight-binding model of free Majorana fermions coupled with static Z_2 gauge fields. The Majorana fermion model can be viewed as a model of time-reversal invariant superconductor and is classified as a member of symmetry class DIII in the Altland-Zirnbauer classification. The ground-state phase diagram has two topologically distinct gapped phases which are distinguished by a Z_2 topological invariant. The topologically nontrivial phase supports both a Kramers' pair of gapless Majorana edge modes at the boundary and a Kramers' pair of zero-energy Majorana states bound to a 0-flux vortex in the \pi-flux background. Power-law decaying correlation functions of spins along the edge are obtained by taking the gapless Majorana edge modes into account. The model is also defined on the one-dimension ladder, in which case again the ground-state phase diagram has Z_2 trivial and non-trivial phases.Comment: 17 pages, 9 figure

Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals

We investigated human alternative protein isoforms of >2600 genes based on full-length cDNA clones and SwissProt. We classified the isoforms and examined their co-occurrence for each gene. Further, we investigated potential relationships between these changes and differential subcellular localization. The two most abundant patterns were the one with different C-terminal regions and the one with an internal insertion, which together account for 43% of the total. Although changes of the N-terminal region are less common than those of the C-terminal region, extension of the C-terminal region is much less common than that of the N-terminal region, probably because of the difficulty of removing stop codons in one isoform. We also found that there are some frequently used combinations of co-occurrence in alternative isoforms. We interpret this as evidence that there is some structural relationship which produces a repertoire of isoformal patterns. Finally, many terminal changes are predicted to cause differential subcellular localization, especially in targeting either peroxisomes or mitochondria. Our study sheds new light on the enrichment of the human proteome through alternative splicing and related events. Our database of alternative protein isoforms is available through the internet

Position-Velocity Diagrams for the Maser Emission coming from a Keplerian Ring

We have studied the maser emission from a thin, planar, gaseous ring in Keplerian rotation around a central mass observed edge-on. The absorption coefficient within the ring is assumed to follow a power law dependence with the distance from the central mass as, k=k0r^{-q}. We have calculated position-velocity diagrams for the most intense maser features, for different values of the exponent q. We have found that, depending on the value of q, these diagrams can be qualitatively different. The most intense maser emission at a given velocity can either come mainly from regions close to the inner or outer edges of the amplifying ring or from the line perpendicular to the line of sight and passing through the central mass (as is commonly assumed). Particularly, when q>1 the position-velocity diagram is qualitatively similar to the one observed for the water maser emission in the nucleus of the galaxy NGC 4258. In the context of this simple model, we conclude that in this object the absorption coefficient depends on the radius of the amplifying ring as a decreasing function, in order to have significant emission coming from the inner edge of the ring.Comment: 13 pages, 7 figures, to appear in the 2007 July 20 issue of The Astrophysical Journa

TreeGrad: Transferring Tree Ensembles to Neural Networks

Gradient Boosting Decision Tree (GBDT) are popular machine learning algorithms with implementations such as LightGBM and in popular machine learning toolkits like Scikit-Learn. Many implementations can only produce trees in an offline manner and in a greedy manner. We explore ways to convert existing GBDT implementations to known neural network architectures with minimal performance loss in order to allow decision splits to be updated in an online manner and provide extensions to allow splits points to be altered as a neural architecture search problem. We provide learning bounds for our neural network.Comment: Technical Report on Implementation of Deep Neural Decision Forests Algorithm. To accompany implementation here: https://github.com/chappers/TreeGrad. Update: Please cite as: Siu, C. (2019). "Transferring Tree Ensembles to Neural Networks". International Conference on Neural Information Processing. Springer, 2019. arXiv admin note: text overlap with arXiv:1909.1179

Kinematics of Spiral Arm Streaming in M51

We use CO and H alpha velocity fields to study the gas kinematics in the spiral arms and interarms of M51 (NGC 5194), and fit the 2D velocity field to estimate the radial and tangential velocity components as a function of spiral phase (arm distance). We find large radial and tangential streaming velocities, which are qualitatively consistent with the predictions of density wave theory and support the existence of shocks. The streaming motions are complex, varying significantly across the galaxy as well as along and between arms. Aberrations in the velocity field indicate that the disk is not coplanar, perhaps as far in as 20\arcsec\ (800 pc) from the center. Velocity profile fits from CO and H alpha are typically similar, suggesting that most of the H alpha emission originates from regions of recent star formation. We also explore vortensity and mass conservation conditions. Vortensity conservation, which does not require a steady state, is empirically verified. The velocity and density profiles show large and varying mass fluxes, which are inconsistent with a steady flow for a single dominant global spiral mode. We thus conclude that the spiral arms cannot be in a quasi-steady state in any rotating frame, and/or that out of plane motions may be significant.Comment: 50 pages, including 20 figures; Accepted for publication in ApJ. PDF version with high resolution figures available at http://www.astro.umd.edu/~shetty/Research

Bipolar-Hyper-Shell Galactic Center Statrburst Model: Further Evidence from ROSAT Data and New Radio and X-ray Simulations

Using the all-sky ROSAT soft X-ray and 408-MHz radio continuum data, we show that the North Polar Spur and its western and southern counter-spurs draw a giant dumbbell-shape necked at the galactic plane. We interpret these features as due to a shock front originating from a starburst 15 million years ago with a total energy of the order of $\sim 10^{56}$ ergs or $10^5$ type II supernovae. We simulate all-sky distributions of radio continuum and soft X-ray intensities based on the bipolar-hyper-shell galactic center starburst model. The simulations can well reproduce the radio NPS and related spurs, as well as radio spurs in the tangential directions of spiral arms. Simulated X-ray maps in 0.25, 0.75 and 1.5 keV bands reproduce the ROSAT X-ray NPS, its western and southern counter-spurs, and the absorption layer along the galactic plane. We propose to use the ROSAT all-sky maps to probe the physics of gas in the halo-intergalactic interface, and to directly date and measure the energy of a recent Galactic Center starburst.Comment: To appear in ApJ, Latex MS in ApJ macro, 8 figures in jpg (original quality ps figs available on request