Water Maser Emission from the Active Nucleus in M51

22 GHz water vapor `kilomaser' emission is reported from the central region of the Whirlpool galaxy M 51 (NGC 5194). The red-shifted spectral features (Vlsr ~ 560 km/s), flaring during most of the year 2000, originate from a spatially unresolved maser spot of size < 30 mas (< 1.5 pc), displaced by < 250 mas from the nucleus. The data provide the first direct evidence for the association of an H2O kilomaser with an active galactic nucleus (AGN). In early 2001, blue-shifted maser emission (Vlsr ~ 435 km/s) was also detected. Red- and blue-shifted features bracket the systemic velocity asymmetrically. Within the standard model of a rotating Keplerian torus, this may either suggest the presence of a highly eccentric circumnuclear cloud or red- and blue-shifted `high velocity' emission from a radially extended torus. Most consistent with the measured H2O position is, however, an association of the red-shifted H2O emission with the northern part of the bipolar radio jet. In this scenario, the (weaker) northern jet is receding while the blue-shifted H2O emission is associated with the approaching southern jet.Comment: 9 pages, 1 figur

Time-reversal symmetric Kitaev model and topological superconductor in two dimensions

A time-reversal invariant Kitaev-type model is introduced in which spins (Dirac matrices) on the square lattice interact via anisotropic nearest-neighbor and next-nearest-neighbor exchange interactions. The model is exactly solved by mapping it onto a tight-binding model of free Majorana fermions coupled with static Z_2 gauge fields. The Majorana fermion model can be viewed as a model of time-reversal invariant superconductor and is classified as a member of symmetry class DIII in the Altland-Zirnbauer classification. The ground-state phase diagram has two topologically distinct gapped phases which are distinguished by a Z_2 topological invariant. The topologically nontrivial phase supports both a Kramers' pair of gapless Majorana edge modes at the boundary and a Kramers' pair of zero-energy Majorana states bound to a 0-flux vortex in the \pi-flux background. Power-law decaying correlation functions of spins along the edge are obtained by taking the gapless Majorana edge modes into account. The model is also defined on the one-dimension ladder, in which case again the ground-state phase diagram has Z_2 trivial and non-trivial phases.Comment: 17 pages, 9 figure

Strongly Coupled Semi-Direct Mediation of Supersymmetry Breaking

Strongly coupled semi-direct gauge mediation models of supersymmetry breaking through massive mediators with standard model charges are investigated by means of composite degrees of freedom. Sizable mediation is realized to generate the standard model gaugino masses for a small mediator mass without breaking the standard model symmetries.Comment: 7 pages; v2: the model generalized, gaugino mass corrected; v3: explanations expanded, references adde

Specific heat and low-lying excitations in the mixed state for a type II superconductor

Low temperature behavior of the electronic specific heat $C(T)$ in the mixed state is by the self-consistent calculation of the Eilenberger theory. In addition to $\gamma T$-term ($\gamma$ is a Sommerfeld coefficient), $C(T)$ has significant contribution of $T^2$-term intrinsic in the vortex state. We identify the origin of the $T^2$-term as (i) V-shape density of states in the vortex state and (ii) Kramer-Pesch effect of vortex core shrinking upon lowering $T$. These results both for full-gap and line node cases reveal that the vortex core is a richer electronic structure beyond the normal core picture.Comment: Accepted in Phys. Rev. B. 5 pages, 5 figure

The Discovery of Water Maser Emission from Eight Nearby Galaxies

Using the Green Bank Telescope, we conducted a ``snapshot'' survey for water maser emission toward the nuclei of 611 galaxies and detected eight new sources. The sample consisted of nearby (v < 5000 km/s) and luminous (M_B < -19.5) galaxies, some with known nuclear activity but most not previously known to host AGNs. Our detections include both megamasers associated with AGNs and relatively low luminosity masers probably associated with star formation. The detection in UGC 3789 is particularly intriguing because the spectrum shows both systemic and high-velocity lines indicative of emission from an AGN accretion disk seen edge-on. Based on six months of monitoring, we detected accelerations among the systemic features ranging from 2 to 8 km/s/yr, the larger values belonging to the most redshifted systemic components. High-velocity maser lines in UGC 3789 show no detectable drift over the same period. Although UGC 3789 was not known to be an AGN prior to this survey, the presence of a disk maser is strong evidence for nuclear activity, and an optical spectrum obtained later has confirmed it. With follow up observations, it may be possible to measure a geometric distance to UGC 3789.Comment: to appear in Astrophysical Journal, 1 May 200

All-or-none switching of transcriptional activity on single DNA molecules caused by a discrete conformational transition

Recently, it has been confirmed that long duplex DNA molecules with sizes larger than several tens of kilo-base pairs (kbp), exhibit a discrete conformational transition from an elongated coil state to a compact globule state upon the addition of various kinds of chemical species that usually induce DNA condensation. In this study, we performed a single-molecule observation on a large DNA, Lambda ZAP II DNA (ca. 41 kbp), in a solution containing RNA polymerase and substrates along with spermine, a tetravalent cation, at different concentrations, by use of fluorescence staining of both DNA and RNA. We found that transcription, or RNA production, is completely inhibited in the compact state, but is actively performed in the unfolded coil state. Such an all-or-none effect on transcriptional activity induced by the discrete conformational transition of single DNA molecules is discussed in relation to the mechanism of the regulation of large-scale genetic activity.Comment: 14 pages, 2 figure

A Frictional Cooling Demonstration Experiment with Protons

Muon cooling is the main technological obstacle in the building of a muon collider. A muon cooling scheme based on Frictional Cooling holds promise in overcoming this obstacle. An experiment designed to demonstrate the Frictional Cooling concept using protons was undertaken. Although the results were inconclusive in the observation of cooling, the data allowed for the qualification of detailed simulations which are used to simulate the performance of a muon collider.Comment: 24 Pages 16 figures 2 table

Recoverable One-dimensional Encoding of Three-dimensional Protein Structures

Protein one-dimensional (1D) structures such as secondary structure and contact number provide intuitive pictures to understand how the native three-dimensional (3D) structure of a protein is encoded in the amino acid sequence. However, it has not been clear whether a given set of 1D structures contains sufficient information for recovering the underlying 3D structure. Here we show that the 3D structure of a protein can be recovered from a set of three types of 1D structures, namely, secondary structure, contact number and residue-wise contact order which is introduced here for the first time. Using simulated annealing molecular dynamics simulations, the structures satisfying the given native 1D structural restraints were sought for 16 proteins of various structural classes and of sizes ranging from 56 to 146 residues. By selecting the structures best satisfying the restraints, all the proteins showed a coordinate RMS deviation of less than 4\AA{} from the native structure, and for most of them, the deviation was even less than 2\AA{}. The present result opens a new possibility to protein structure prediction and our understanding of the sequence-structure relationship.Comment: Corrected title. No Change In Content

Utilizando R para manipular dados de projeção climática.

O Laboratório de Modelagem Agroambiental (LMA) da Embrapa Informática Agropecuária utiliza dados de projeção climática para realização de simulações de cenários agrícolas futuros. Grande parte desses dados é disponibilizada no formato NetCDF. A NetCDF é uma biblioteca livre, que possui funções de manipulação de dados armazenados em matrizes que contêm dimensões, variáveis e metadados. É utilizada em linguagens como C, C++, Fortran, Java, R entre outras. Essa combinação entre linguagem, biblioteca e arquivo possibilita criação, acesso e compartilhamento de dados científicos. Os arquivos NetCDF possuem informações descritivas sobre os dados que contêm (os chamados metadados). Podem armazenar diferentes tipos de variáveis numéricas e caracteres. Além disso, o formato é eficiente, permitindo ao usuário acessar um pequeno subconjunto de uma grande base de dados, visualizar simultaneamente o mesmo arquivo por mais de um leitor e anexar dados a um arquivo NetCDF, sem ter que copiar sua base de dados ou redefinir sua estrutura. Antes de serem utilizados, esses dados passam por diversos processamentos, tais como recorte temporal e espacial, reamostragem de grade e extração de dados. O objetivo deste trabalho é demonstrar como tais processamentos podem ser realizados utilizando o R