How accurate are the non-linear chemical Fokker-Planck and chemical Langevin equations?

The chemical Fokker-Planck equation and the corresponding chemical Langevin equation are commonly used approximations of the chemical master equation. These equations are derived from an uncontrolled, second-order truncation of the Kramers-Moyal expansion of the chemical master equation and hence their accuracy remains to be clarified. We use the system-size expansion to show that chemical Fokker-Planck estimates of the mean concentrations and of the variance of the concentration fluctuations about the mean are accurate to order $\Omega^{-3/2}$ for reaction systems which do not obey detailed balance and at least accurate to order $\Omega^{-2}$ for systems obeying detailed balance, where $\Omega$ is the characteristic size of the system. Hence the chemical Fokker-Planck equation turns out to be more accurate than the linear-noise approximation of the chemical master equation (the linear Fokker-Planck equation) which leads to mean concentration estimates accurate to order $\Omega^{-1/2}$ and variance estimates accurate to order $\Omega^{-3/2}$. This higher accuracy is particularly conspicuous for chemical systems realized in small volumes such as biochemical reactions inside cells. A formula is also obtained for the approximate size of the relative errors in the concentration and variance predictions of the chemical Fokker-Planck equation, where the relative error is defined as the difference between the predictions of the chemical Fokker-Planck equation and the master equation divided by the prediction of the master equation. For dimerization and enzyme-catalyzed reactions, the errors are typically less than few percent even when the steady-state is characterized by merely few tens of molecules.Comment: 39 pages, 3 figures, accepted for publication in J. Chem. Phy

Phenomenology of Noncommutative Field Theories

Experimental limits on the violation of four-dimensional Lorentz invariance imply that noncommutativity among ordinary spacetime dimensions must be small. In this talk, I review the most stringent bounds on noncommutative field theories and suggest a possible means of evading them: noncommutativity may be restricted to extra, compactified spatial dimensions. Such theories have a number of interesting features, including Abelian gauge fields whose Kaluza-Klein excitations have self couplings. We consider six-dimensional QED in a noncommutative bulk, and discuss the collider signatures of the model.Comment: 7 pages RevTeX, 4 eps figures, Invited plenary talk, IX Mexican Workshop on Particles and Fields, November 17-22, 2003, Universidad de Colima, Mexic

Noncommutative Quantum Cosmology

We consider noncommutative quantum cosmology in the case of the low-energy string effective theory. Exacts solutions are found and compared with the commutative case.The Noncommutative quantum cosmology is considered in the case of the low-energy string effective theory. Exacts solutions are found and compared with the commutative case.Comment: Revtex4, 3 pages, 2 figures, to appear in Gen.Rel.Gra

The Statistics of Supersonic Isothermal Turbulence

We present results of large-scale three-dimensional simulations of supersonic Euler turbulence with the piecewise parabolic method and multiple grid resolutions up to 2048^3 points. Our numerical experiments describe non-magnetized driven turbulent flows with an isothermal equation of state and an rms Mach number of 6. We discuss numerical resolution issues and demonstrate convergence, in a statistical sense, of the inertial range dynamics in simulations on grids larger than 512^3 points. The simulations allowed us to measure the absolute velocity scaling exponents for the first time. The inertial range velocity scaling in this strongly compressible regime deviates substantially from the incompressible Kolmogorov laws. The slope of the velocity power spectrum, for instance, is -1.95 compared to -5/3 in the incompressible case. The exponent of the third-order velocity structure function is 1.28, while in incompressible turbulence it is known to be unity. We propose a natural extension of Kolmogorov's phenomenology that takes into account compressibility by mixing the velocity and density statistics and preserves the Kolmogorov scaling of the power spectrum and structure functions of the density-weighted velocity v=\rho^{1/3}u. The low-order statistics of v appear to be invariant with respect to changes in the Mach number. For instance, at Mach 6 the slope of the power spectrum of v is -1.69, and the exponent of the third-order structure function of v is unity. We also directly measure the mass dimension of the "fractal" density distribution in the inertial subrange, D_m = 2.4, which is similar to the observed fractal dimension of molecular clouds and agrees well with the cascade phenomenology.Comment: 15 pages, 19 figures, ApJ v665, n2, 200

Remarks on the Formulation of Quantum Mechanics on Noncommutative Phase Spaces

We consider the probabilistic description of nonrelativistic, spinless one-particle classical mechanics, and immerse the particle in a deformed noncommutative phase space in which position coordinates do not commute among themselves and also with canonically conjugate momenta. With a postulated normalized distribution function in the quantum domain, the square of the Dirac delta density distribution in the classical case is properly realised in noncommutative phase space and it serves as the quantum condition. With only these inputs, we pull out the entire formalisms of noncommutative quantum mechanics in phase space and in Hilbert space, and elegantly establish the link between classical and quantum formalisms and between Hilbert space and phase space formalisms of noncommutative quantum mechanics. Also, we show that the distribution function in this case possesses 'twisted' Galilean symmetry.Comment: 25 pages, JHEP3 style; minor changes; Published in JHE

Nyquist method for Wigner-Poisson quantum plasmas

By means of the Nyquist method, we investigate the linear stability of electrostatic waves in homogeneous equilibria of quantum plasmas described by the Wigner-Poisson system. We show that, unlike the classical Vlasov-Poisson system, the Wigner-Poisson case does not necessarily possess a Penrose functional determining its linear stability properties. The Nyquist method is then applied to a two-stream distribution, for which we obtain an exact, necessary and sufficient condition for linear stability, as well as to a bump-in-tail equilibrium.Comment: 6 figure

Noncommutative deformation of four dimensional Einstein gravity

We construct a model for noncommutative gravity in four dimensions, which reduces to the Einstein-Hilbert action in the commutative limit. Our proposal is based on a gauge formulation of gravity with constraints. While the action is metric independent, the constraints insure that it is not topological. We find that the choice of the gauge group and of the constraints are crucial to recover a correct deformation of standard gravity. Using the Seiberg-Witten map the whole theory is described in terms of the vierbeins and of the Lorentz transformations of its commutative counterpart. We solve explicitly the constraints and exhibit the first order noncommutative corrections to the Einstein-Hilbert action.Comment: LaTex, 11 pages, comments added, to appear in Classical and Quantum Gravit

The Seiberg-Witten Map for a Time-dependent Background

In this paper the Seiberg-Witten map for a time-dependent background related to a null-brane orbifold is studied. The commutation relations of the coordinates are linear, i.e. it is an example of the Lie algebra type. The equivalence map between the Kontsevich star product for this background and the Weyl-Moyal star product for a background with constant noncommutativity parameter is also studied.Comment: latex, 13 pages, references added and some misprints correcte

Lax pair and Darboux transformation of noncommutative U(N) principal chiral model

We present a noncommutative generalization of Lax formalism of U(N) principal chiral model in terms of a one-parameter family of flat connections. The Lax formalism is further used to derive a set of parametric noncommutative B\"{a}cklund transformation and an infinite set of conserved quantities. From the Lax pair, we derive a noncommutative version of the Darboux transformation of the model.Comment: 1+20 page

Relational time in generally covariant quantum systems: four models

We analize the relational quantum evolution of generally covariant systems in terms of Rovelli's evolving constants of motion and the generalized Heisenberg picture. In order to have a well defined evolution, and a consistent quantum theory, evolving constants must be self-adjoint operators. We show that this condition imposes strong restrictions to the choices of the clock variables. We analize four cases. The first one is non- relativistic quantum mechanics in parametrized form. We show that, for the free particle case, the standard choice of time is the only one leading to self-adjoint evolving constants. Secondly, we study the relativistic case. We show that the resulting quantum theory is the free particle representation of the Klein Gordon equation in which the position is a perfectly well defined quantum observable. The admissible choices of clock variables are the ones leading to space-like simultaneity surfaces. In order to mimic the structure of General Relativity we study the SL(2R) model with two Hamiltonian constraints. The evolving constants depend in this case on three independent variables. We show that it is possible to find clock variables and inner products leading to a consistent quantum theory. Finally, we discuss the quantization of a constrained model having a compact constraint surface. All the models considered may be consistently quantized, although some of them do not admit any time choice such that the equal time surfaces are transversal to the orbits.Comment: 18 pages, revtex fil