Spatial and seasonal variation in reproductive indices of the clupeids Limnothrissa miodon and Stolothrissa tanganicae in the Congolese waters of northern Lake Tanganyika

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Spatial and seasonal variation in reproductive indices of the clupeids Limnothrissa miodon and Stolothrissa tanganicae in the Congolese waters of northern Lake Tanganyika

peer reviewedKnowledge on the reproductive biology of the endemic clupeids Limnothrissa miodon and Stolothrissa tanganicae, two main target species of the pelagic fisheries of Lake Tanganyika, is constrained by fragmented monitoring activities. Here, we investigate the nursing areas of L. miodon, the timing of reproductive activities of littoral and pelagic L. miodon, and the timing of reproductive activities of pelagic S. tanganicae in the Congolese waters of the northern end of Lake Tanganyika (Bujumbura sub-basin). Nursing areas were determined year-round (2009–2010) based on the presence of clupeid larvae at two sandy and two stony beaches. The gonadosomatic index (GSI) and the proportion of fish having ripe gonads were used to study variation in reproductive indices in space (littoral vs. pelagic zones) during one year (2013–2014), as well as in time (dry vs. rainy season) during three years (2013–2016). Larvae of L. miodon were more frequently encountered on sandy than on stony beaches. Mature L. miodon females were more abundant in the littoral than in the pelagic zone, while the proportion of mature males in both habitats was similar. Irregular, low amplitude peaks could be distinguished in the GSI and proportion of mature males and females, but averages only differed between the dry and the rainy season in males. In contrast, GSI and proportions of mature males and females in S. tanganicae were higher in the dry season than in the rainy season. The reproductive effort of males and females of S. tanganicae and littoral L. miodon, but not pelagic L. miodon, was strongly synchronized. Interestingly, reproductive investment was also synchronised between pelagic male L. miodon, and pelagic S. tanganicae. Our time series strongly supports the view that L. miodon reproduces year-round in the littoral zone, while reproduction in S. tanganicae is seasonal. For fisheries management, we recommend year-round protection of sandy beaches, which are the main breeding grounds for L. miodon. © 2022, Royal Belgian Institute of Natural Sciences. All rights reserved

First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae : a lack of population structure calls for integrated management of this important fisheries target species

BackgroundClupeid fisheries in Lake Tanganyika (East Africa) provide food for millions of people in one of the world's poorest regions. Due to climate change and overfishing, the clupeid stocks of Lake Tanganyika are declining. We investigate the population structure of the Lake Tanganyika sprat Stolothrissa tanganicae, using for the first time a genomic approach on this species. This is an important step towards knowing if the species should be managed separately or as a single stock. Population structure is important for fisheries management, yet understudied for many African freshwater species. We hypothesize that distinct stocks of S. tanganicae could be present due to the large size of the lake (isolation by distance), limnological variation (adaptive evolution), or past separation of the lake (historical subdivision). On the other hand, high mobility of the species and lack of obvious migration barriers might have resulted in a homogenous population.ResultsWe performed a population genetic study on wild-caught S. tanganicae through a combination of mitochondrial genotyping (96 individuals) and RAD sequencing (83 individuals). Samples were collected at five locations along a north-south axis of Lake Tanganyika. The mtDNA data had low global FST and, visualised in a haplotype network, did not show phylogeographic structure. RAD sequencing yielded a panel of 3504 SNPs, with low genetic differentiation (F-ST=0.0054; 95% CI: 0.0046-0.0066). PCoA, fineRADstructure and global F-ST suggest a near-panmictic population. Two distinct groups are apparent in these analyses (F-ST=0.1338 95% CI: 0.1239,0.1445), which do not correspond to sampling locations. Autocorrelation analysis showed a slight increase in genetic difference with increasing distance. No outlier loci were detected in the RADseq data.ConclusionOur results show at most very weak geographical structuring of the stock and do not provide evidence for genetic adaptation to historical or environmental differences over a north-south axis. Based on these results, we advise to manage the stock as one population, integrating one management strategy over the four riparian countries. These results are a first comprehensive study on the population structure of these important fisheries target species, and can guide fisheries management.Peer reviewe