Harnessing Genome Editing Techniques to Engineer Disease Resistance in Plants

Modern genome editing (GE) techniques, which include clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated protein 9 (CRISPR/Cas9) system, transcription activator-like effector nucleases (TALENs), zinc-finger nucleases (ZFNs) and LAGLIDADG homing endonucleases (meganucleases), have so far been used for engineering disease resistance in crops. The use of GE technologies has grown very rapidly in recent years with numerous examples of targeted mutagenesis in crop plants, including gene knockouts, knockdowns, modifications, and the repression and activation of target genes. CRISPR/Cas9 supersedes all other GE techniques including TALENs and ZFNs for editing genes owing to its unprecedented efficiency, relative simplicity and low risk of off-target effects. Broad-spectrum disease resistance has been engineered in crops by GE of either specific host-susceptibility genes (S gene approach), or cleaving DNA of phytopathogens (bacteria, virus or fungi) to inhibit their proliferation. This review focuses on different GE techniques that can potentially be used to boost molecular immunity and resistance against different phytopathogens in crops, ultimately leading to the development of promising disease-resistant crop varieties

Phytohormones as Growth Regulators During Abiotic Stress Tolerance in Plants

Phytohormones (PHs) play crucial role in regulation of various physiological and biochemical processes that govern plant growth and yield under optimal and stress conditions. The interaction of these PHs is crucial for plant survival under stressful environments as they trigger signaling pathways. Hormonal cross regulation initiate a cascade of reactions which finely tune the physiological processes in plant architecture that help plant to grow under suboptimal growth conditions. Recently, various studies have highlighted the role of PHs such as abscisic acid, salicylic acid, ethylene, and jasmonates in the plant responses toward environmental stresses. The involvement of cytokinins, gibberellins, auxin, and relatively novel PHs such as strigolactones and brassinosteroids in plant growth and development has been documented under normal and stress conditions. The recent identification of the first plant melatonin receptor opened the door to this regulatory molecule being considered a new plant hormone. However, polyamines, which are not considered PHs, have been included in this chapter. Various microbes produce and secrete hormones which helped the plants in nutrient uptake such as N, P, and Fe. Exogenous use of such microbes help plants in correcting nutrient deficiency under abiotic stresses. This chapter focused on the recent developments in the knowledge related to PHs and their involvement in abiotic stresses of anticipation, signaling, cross-talk, and activation of response mechanisms. In view of role of hormones and capability of microbes in producing hormones, we propose the use of hormones and microbes as potential strategy for crop stress management.Fil: EL Sabagh, Ayman. Scientific And Technological Research Council Of Turkey; TurquíaFil: Islam, Mohammad Sohidul. Kafrelsheikh University; EgiptoFil: Hossain, Akbar. Hajee Mohammad Danesh And Technology University; BangladeshFil: Iqbal, Muhammad Aamir. University Of Poonch; PakistánFil: Mubeen, Mohammad. Comsats University Islamabad; PakistánFil: Waleed, Mirza. Comsats University Islamabad; PakistánFil: Reginato, Mariana Andrea. Universidad Nacional de Río Cuarto. Facultad de Ciencias Exactas Fisicoquímicas y Naturales. Instituto de Investigaciones Agrobiotecnológicas. - Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigaciones Agrobiotecnológicas; ArgentinaFil: Battaglia, Martin. Cornell University; Estados UnidosFil: Ahmed, Sharif. International Rice Research Institute; FilipinasFil: Rehman, Abdul. The Islamia University Of Bahawalpur; PakistánFil: Arif, Muhammad. The University Of Agriculture; PakistánFil: Athar, Habib-Ur-Rehman. Bahauddin Zakariya University; PakistánFil: Ratnasekera, Disna. University Of Ruhuna; Sri LankaFil: Danish, Subhan. Bahauddin Zakariya University; PakistánFil: Raza, Ali. Sichuan Agricultural University; ChinaFil: Rajendran, Karthika. Vellore Institute Of Technology; IndiaFil: Mushtaq, Muntazir. Icar-national Bureau Of Plant Genetic Resources; IndiaFil: Skalicky, Milan. Czech University Of Life Sciences Prague; República ChecaFil: Brestic, Marian. Czech University Of Life Sciences Prague; República ChecaFil: Soufan, Walid. King Saud University; Arabia SauditaFil: Fahad, Shah. University Of Haripur; PakistánFil: Pandey, Saurabh. Guru Nanak Dev University; IndiaFil: Abdelhamid, Magdi T.. National Research Centre Dokki; Egipt

A CRISPR way for accelerating cereal crop improvement: Progress and challenges

Humans rely heavily on cereal grains as a key source of nutrients, hence regular improvement of cereal crops is essential for ensuring food security. The current food crisis at the global level is due to the rising population and harsh climatic conditions which prompts scientists to develop smart resilient cereal crops to attain food security. Cereal crop improvement in the past generally depended on imprecise methods like random mutagenesis and conventional genetic recombination which results in high off targeting risks. In this context, we have witnessed the application of targeted mutagenesis using versatile CRISPR-Cas systems for cereal crop improvement in sustainable agriculture. Accelerated crop improvement using molecular breeding methods based on CRISPR-Cas genome editing (GE) is an unprecedented tool for plant biotechnology and agriculture. The last decade has shown the fidelity, accuracy, low levels of off-target effects, and the high efficacy of CRISPR technology to induce targeted mutagenesis for the improvement of cereal crops such as wheat, rice, maize, barley, and millets. Since the genomic databases of these cereal crops are available, several modifications using GE technologies have been performed to attain desirable results. This review provides a brief overview of GE technologies and includes an elaborate account of the mechanisms and applications of CRISPR-Cas editing systems to induce targeted mutagenesis in cereal crops for improving the desired traits. Further, we describe recent developments in CRISPR-Cas–based targeted mutagenesis through base editing and prime editing to develop resilient cereal crop plants, possibly providing new dimensions in the field of cereal crop genome editing

A Numerical Study of MHD Carreau Nanofluid Flow with Gyrotactic Microorganisms over a Plate, Wedge, and Stagnation Point

This article addresses the numerical exploration of steady and 2D flow of MHD Carreau nanofluid filled with motile microorganisms over three different geometries, i.e., plate, wedge, and stagnation point of a flat plate. The influence of magnetic field, viscous dissipation, thermophoresis, and Brownian motion is considered for both cases, i.e., shear thinning and shear thickening. A set of relevant similarity transformations are utilized to obtain dimensionless form of governing coupled nonlinear partial differential equations (PDEs). The transformed system of ordinary differential equations (ODEs) is then numerically solved by bvp4c via MATLAB based on shooting technique and Runge–Kutta–Fehlberg (RKF) scheme via MAPLE. Also, a numerical analysis has been made for skin friction factor, heat, and mass transfer rates. Results elucidate that all the profiles except velocity show decreasing behavior for higher values of magnetic field parameter. Among all three flow geometries for both shear thinning and shear thickening cases, the flow over a plate has lesser skin friction factor. The nanoparticle concentration and density of motile microorganism decrease in both the shear thinning and shear thickening cases, for increasing values of Brownian motion (Nb), but reverse trend is observed for rising values of thermophoresis parameter (Nt). Furthermore, it is observed that, as we increase the values of suction/injection parameter (S), the velocity of fluid increases but decreases the fluid temperature, concentration of mass and density of motile organisms over a plate, wedge, and stagnation point of a flat plate. Also, we observed that shear thinning nanofluid has higher rate of heat, mass, and motile microorganisms mass transfers than shear thickening fluid. Both shear thinning and thickening nanofluid have a low rate of heat/mass and gyrotactic microorganisms mass transfer over plate among wedge and stagnation point flow

Analysis of MHD Fluids around a Linearly Stretching Sheet in Porous Media with Thermophoresis, Radiation, and Chemical Reaction

This paper presents the comparative analysis of MHD boundary layer fluid flow around a linearly stretching surface in the presence of radiative heat flux, heat generation/absorption, thermophoresis velocity, and chemical reaction effects in a permeable surface. The governing equations are highly nonlinear PDEs which are converted into coupled ODEs with the help of dimensionless variables and solved by using semianalytical techniques. The numerical and graphical outcomes are observed and presented via tables and graphs. Also, the Nusselt and Sherwood numbers and skin friction coefficient are illustrated by tables. On observation of heat and mass transfer, it was noticed that Maxwell fluid dominates the other fluids such as Newtonian, Williamson, and Casson fluid due to high rate of thermal conductivity, and hence, Maxwell fluid has better tendency for heat and mass transfer than other Newtonian and non-Newtonian fluids

Influence of Chemically Reacting Ferromagnetic Carreau Nanofluid over a Stretched Sheet with Magnetic Dipole and Viscous Dissipation

Due to potential implications, boundary layer analysis of chemically reacting Carreau nanofluid has been carried out to examine flow properties of ferromagnetic fluid over a stretched sheet in the presence of magnetic dipole, for shear thinning and shear thickening fluids. Furthermore, the transportation of heat under thermal radiation, heat generation, the Brownian, and thermophoresis aspects has been evaluated. The dimensionless form of highly nonlinear coupled partial differential equations is obtained using suitable similarity transformations and then solved numerically by well-known bvp4c technique via MATLAB based on the shooting method. The outcomes of physical quantities are presented through graphs and numerical benchmarks. Moreover, outcomes for skin fraction, Sherwood and Nusselt numbers for velocity, concentration, and temperature are also estimated in this study. The present study reveals that the concentration and thermal boundary layer thicknesses were higher for shear thinning n1 fluids, but reverse effects are to be observed for momentum boundary layer thickness

Not Available

Not AvailablePathogenesis-related (PR) proteins and antimicrobial peptides (AMPs) are a group of diverse molecules that are induced by phytopathogens as well as defense related signaling molecules. They are the key components of plant innate immune system especially systemic acquired resistance (SAR), and are widely used as diagnostic molecular markers of defense signaling pathways. Although, PR proteins and peptides have been isolated much before but their biological function remains largely enigmatic despite the availability of new scientific tools. The earlier studies have demonstrated that PR genes provide enhanced resistance against both biotic and abiotic stresses, which make them one of the most promising candidates for developing multiple stress tolerant crop varieties. In this regard, plant genetic engineering technology is widely accepted as one of the most fascinating approach to develop the disease resistant transgenic crops using different antimicrobial genes like PR genes. Overexpression of PR genes (chitinase, glucanase, thaumatin, defensin and thionin) individually or in combination have greatly uplifted the level of defense response in plants against a wide range of pathogens. However, the detailed knowledge of signaling pathways that regulates the expression of these versatile proteins is critical for improving crop plants to multiple stresses, which is the future theme of plant stress biology. Hence, this review provides an overall overview on the PR proteins like their classification, role in multiple stresses (biotic and abiotic) as well as in various plant defense signaling cascades. We also highlight the success and snags of transgenic plants expressing PR proteins and peptides.Not Availabl

Integrated Nutrient Management as a Low Cost and Eco-Friendly Strategy for Sustainable Fruit Production in Apricot (Prunus armeniaca L.)

ABSTRACTProlonged and excessive use of chemical fertilizers has resulted in serious harm to soil health and ecosystems. This study aimed to reduce the cultivation costs for apricot trees, nearly 1/3rd of which are spent on fertilizers. The research was conducted on fully grown apricot trees of the cultivar “New Castle,” in the Solan district of Himachal Pradesh, India. The experiment consisted of fourteen treatment combinations evaluated in triplicate and statistically analyzed using a randomized block design (RBD). Results revealed that treatment T12 [50% Nitrogen (Calcium Nitrate) + 50% Nitrogen (Urea) + Azotobacter + Phosphate Solubilizing Bacteria + Vermicompost] resulted in the highest percent increase in tree trunk girth (6.82%), highest leaf chlorophyll content (3.00 mg g−1 fresh weight), leaf area (58.29 cm), fruit set (61.00%) and total yield (61.9 kg tree−1). In terms of nutrient status, T12 had the highest leaf N (2.95%), leaf K (2.60%), soil N (386.33 kg ha−1), soil P (51.00 kg ha−1) and soil organic carbon (1.81%). The highest net return and profit over recommended dose of fertilizers (RDF) was also recorded in treatment T12. The results of this study show that judicious fertilizer use along with integrated organic manure and bio-fertilizers can reduce cultivation costs, improve soil health, and increase fruit production with minimum ecosystem damage

Sustainable Management of Green Mold Disease of White Button Mushroom Using Botanicals and Biocontrol Agents under Temperate Conditions

Green mold (caused by Trichoderma harzianum) is a destructive disease in mushrooms which limits commercial production. The present investigation was carried out to verify the in vitro and in vivo effect of locally available botanicals and bacterial biocontrol agents against this disease. The in vitro evaluation of ethanol extract of botanicals against mycelial growth of T. harzianum at 1, 2, and 3% concentrations showed that Juglans regia and Allium sativum exhibited maximum mycelial growth inhibition of 84.9 and 79.8%, respectively. When the same botanicals were tested against the mycelial growth of A. bisporus, it was observed that J. regia, Curcuma longa, and Azadirachta mellea were least inhibitory (4.66–7.4%). From the in vivo evaluation of plant botanicals at 2% concentration, J. regia and C. longa had the highest average weight (11.8–11.9 g) of a single fruit body and a combined button yield of 11.3–11.9 kg/quintal compost. Among the bacterial bioagents evaluated in vitro, Pseudomonas flourescens, Azotobacter sp., and Bacillus subtilis displayed stimulatory effects of varying degrees on the mycelial growth of A. bisporus but exhibited antagonistic effects on T. harzianum. B. subtilis-38, and P. flourescens-104. Azotobacter-108 caused the highest mycelial growth inhibition of 97.6, 97.4, and 90.3% of T. harzianum, respectively. The current study reveals that the integration of botanical and bacterial antagonists in pathogen-infested white button mushroom casing reduces green mold infection with corresponding yield gains

Comparative Analysis of Soil Quality Assessment and Its Perception by Rice Farmers

The present study was conducted in three villages of district Budgam in the union territory of Jammu and Kashmir, to find out how farmers differentiate the quality of soils and to determine the level of concurrence between farmers perception and scientific assessment of soil quality. Five fields in each village were selected and ranked on the basis of soil quality indices computed from the minimum data set of indicators, including plant available nutrients N, P, K, Ca, Mg, S, OC, BD, WHC (water holding capacity), CEC (cation exchange capacity) as well as microbial count. The respondents ranked the same 5 selected fields on the bases of their experience and perceptions of soil quality. The study reveals that 58% of farmers ranked the best soils correctly whereas, the percentage of farmers who ranked 2nd, 3rd, 4th and 5th soils correctly was 40, 30, 40, and 45%, respectively. The study found that a greater number of farmers from the remotest village Dalwash were able to judge the soils properly, thereby indicating more profound knowledge and better cognitive abilities to understand soils in the local context. The results divulged by the current study highlight the remarkable local soil knowledge of the farmers and therefore, linking this knowledge system with scientific concepts would prove valuable for sustained land-use management