Extending Geant4 Parallelism with External Libraries (MPI, TBB) and Its Use on HPC Resources

With Geant4 Version 10.0, released in December 2013, one of the most widely used Monte-Carlo codes has been ported to take full advantage of multi- and many-core CPUs thanks to the introduction of event-level parallelism via multithreading. In this paper we review recent developments to allow for a better integration of parallel Geant4 jobs with external libraries. We have chosen to develop examples using the popular Intel Threading Building Block (for short TBB) as an alternative parallelization approach to the native Geant4 POSIX. To simplify the scaling of a Geant4 application across nodes on a cluster we are improving the support of MPI in Geant4. In particular it is now possible to run an hybrid MPI/MT application that uses MPI to scale across nodes and MT to scale across cores. %The recent developments allow users to easily implement parallel application resources that scale on a very large number of nodes and cores typical of HPC resources.Comment: conferenc

Growth of Antiperovskite Oxide Ca3SnO Films by Pulsed Laser Deposition

We report the epitaxial growth of Ca3SnO antiperovskite oxide films on (001)-oriented cubic yttria-stabilized zirconia (YSZ) substrates by using a conventional pulsed laser deposition (PLD) technique. In this work, a sintered Ca3SnO pellet is used as the ablation target. X-ray diffraction measurements demonstrate the (001) growth of Ca3SnO films with the antiperovskite structure and a cube-on-cube orientation relationship to the YSZ substrate. The successful synthesis of the antiperovskite phase is further confirmed by x-ray photoemission spectroscopy. These results strongly suggest that antiperovskite-oxide films can be directly grown on substrates from the target material using a PLD technique

Phospholipase A2 in skin biology : new insights from gene-manipulated mice and lipidomics

The skin represents one of the tissues that are most profoundly influenced by alterations in the quality of lipids (lipoquality). Lipids not only constitute cellular membranes, but also serve as bioactive lipid mediators and essential components of the skin barrier. Phospholipase A2 (PLA2) enzymes supply fatty acids and lysophospholipids from membrane phospholipids, thereby variably affecting cutaneous homeostasis. Accordingly, perturbation of particular PLA2-driven lipid pathways can be linked to various forms of skin disease. In this review article, we highlight the roles of several PLA2 subtypes in cutaneous pathophysiology, as revealed by transgenic/knockout studies in combination with comprehensive lipidomics. We focus mainly on secreted PLA2 group IIF (sPLA2-IIF), which is associated with epidermal hyperplasia through mobilization of a unique lipid metabolite. We also address the distinct roles of sPLA2-IIE in hair follicles and sPLA2-IID in lymphoid immune cells that secondarily affect cutaneous inflammation, and provide some insights into species differences in sPLA2s. Additionally, we briefly overview the patatin-like phospholipase PNPLA1, which belongs to the Ca2+-independent PLA2 (iPLA2) family, as a key regulator of skin barrier function through catalysis of a unique non-PLA2 reaction. These knowledges on lipid metabolism driven by various PLA2 subtypes will open novel opportunities for translated studies toward diagnosis and therapy of human skin diseases

Phylogeographical patterns of a generalist acorn weevil: insight into the biogeographical history of broadleaved deciduous and evergreen forests

<p>Abstract</p> <p>Background</p> <p>Climatic changes during glacial periods have had a major influence on the recent evolutionary history of living organisms, even in temperate forests on islands, where the land was not covered with ice sheets. We investigated the phylogeographical patterns of the weevil <it>Curculio sikkimensis </it>(Curculionidae), a generalist seed predator of Fagaceae plants living in both deciduous oak and evergreen forests of Japan. Its genetic structure was compared to that of another host-specific seed predator, <it>C. hilgendorfi</it>, inhabiting only evergreen forests.</p> <p>Results</p> <p>We examined 921 bp of mitochondrial DNA for 115 individuals collected from 33 populations of <it>C. sikkimensis </it>from 11 plant species of three genera, <it>Quercus</it>, <it>Lithocarpus</it>, and <it>Castanopsis</it>. An analysis of molecular variance revealed that a large proportion (almost 50%, <it>P </it>< 0.001) of the total genetic variance could be explained by differences between two geographical regions, the southwestern and northeastern parts of the main islands of Japan. In contrast, no significant genetic differentiation of the weevil was observed among vegetation types of their utilized host plant species. The phylogeographical patterns of the generalist and the host-specific seed predator exhibited a congruent genetic boundary in the Chugoku-Shikoku region.</p> <p>Conclusion</p> <p>Our results suggest that geology and historical environment have contributed to shaping the present genetic structure of <it>C. sikkimensis</it>. The geographical patterns of genetic differentiation in the Chugoku-Shikoku region observed in the two types of Fagaceae-associated <it>Curculio </it>in this study have also been observed in several plant species growing in warm and cool temperate zones of Japan. The occurrence of this common pattern suggests that deciduous oak and evergreen forests of Japan survived together, or adjacent to each other, in small refugia during glacial ages, in the southwestern and northeastern parts of the main islands, although these two types of forests are presently distributed in cool and warm temperate zones of Japan, respectively.</p

西ベンガル州の2村落

インドの社会経済開発における人的資質に関する地理学的研