Genomic Features Of A Bumble Bee Symbiont Reflect Its Host Environment

Here, we report the genome of one gammaproteobacterial member of the gut microbiota, for which we propose the name >Candidatus Schmidhempelia bombi,> that was inadvertently sequenced alongside the genome of its host, the bumble bee, Bombus impatiens. This symbiont is a member of the recently described bacterial order Orbales, which has been collected from the guts of diverse insect species; however, >Ca. Schmidhempelia> has been identified exclusively with bumble bees. Metabolic reconstruction reveals that >Ca. Schmidhempelia> lacks many genes for a functioning NADH dehydrogenase I, all genes for the high-oxygen cytochrome o, and most genes in the tricarboxylic acid (TCA) cycle. >Ca. Schmidhempelia> has retained NADH dehydrogenase II, the low-oxygen specific cytochrome bd, anaerobic nitrate respiration, mixed-acid fermentation pathways, and citrate fermentation, which may be important for survival in low-oxygen or anaerobic environments found in the bee hindgut. Additionally, a type 6 secretion system, a Flp pilus, and many antibiotic/multidrug transporters suggest complex interactions with its host and other gut commensals or pathogens. This genome has signatures of reduction (2.0 megabase pairs) and rearrangement, as previously observed for genomes of host-associated bacteria. A survey of wild and laboratory B. impatiens revealed that >Ca. Schmidhempelia> is present in 90% of individuals and, therefore, may provide benefits to its host.Center for Insect Science (University of Arizona)National Science Foundation NSF 1046153NIH Director's Pioneer 1DP1OD006416-01NIH R01-HG006677Swiss National Science Foundation 140157, 147881Integrative Biolog

Prenatal IV Cocaine: Alterations in Auditory Information Processing

One clue regarding the basis of cocaine-induced deficits in attentional processing is provided by the clinical findings of changes in the infants’ startle response; observations buttressed by neurophysiological evidence of alterations in brainstem transmission time. Using the IV route of administration and doses that mimic the peak arterial levels of cocaine use in humans, the present study examined the effects of prenatal cocaine on auditory information processing via tests of the auditory startle response (ASR), habituation, and prepulse inhibition (PPI) in the offspring. Nulliparous Long–Evans female rats, implanted with an IV access port prior to breeding, were administered saline, 0.5, 1.0, or 3.0 mg/kg/injection of cocaine HCL (COC) from gestation day (GD) 8–20 (1×/day-GD8–14, 2×/day-GD15–20). COC had no significant effects on maternal/litter parameters or growth of the offspring. At 18–20 days of age, one male and one female, randomly selected from each litter displayed an increased ASR (>30% for males at 1.0 mg/kg and >30% for females at 3.0 mg/kg). When reassessed in adulthood (D90–100), a linear dose–response increase was noted on response amplitude. At both test ages, within-session habituation was retarded by prenatal cocaine treatment. Testing the females in diestrus vs. estrus did not alter the results. Prenatal cocaine altered the PPI response function across interstimulus interval and induced significant sex-dependent changes in response latency. Idazoxan, an α2-adrenergic receptor antagonist, significantly enhanced the ASR, but less enhancement was noted with increasing doses of prenatal cocaine. Thus, in utero exposure to cocaine, when delivered via a protocol designed to capture prominent features of recreational usage, causes persistent, if not permanent, alterations in auditory information processing, and suggests dysfunction of the central noradrenergic circuitry modulating, if not mediating, these responses

Thumb Trauma: Bennett Fractures, Rolando Fractures, and Ulnar Collateral Ligament Injuries

Injuries to the thumb are predominated by fractures of the proximal phalanx, ligamentous injuries about the metacarpophalangeal joint, and metacarpal base fractures. This article will attempt to summarize recent advancements within the realm of thumb trauma, with particular attention to Bennett fractures, Rolando fractures, and ulnar collateral ligament injuries. (J Hand Surg 2009;34A:945-952. Copyright © 2009 T HE THUMB PROVIDES up to 40% of hand function. Total disability of the thumb is devastating and equilibrates to a loss of 22% of bodily function. 1 The thumb's uniqueness and versatility in man is primarily due to the position of the thumb axis. The thumb axis is based at the trapeziometacarpal (TM) joint and is pronated and flexed approximately 80°with respect to the other hand metacarpals. This position enables circumduction, which permits opposition and prehension; however this position also exposes the thumb to unique injury. INCIDENCE Recently, Stanton and colleagues examined the incidence of fractures within the tubular bones of the hand. Thumb fractures were found to occur most commonly in children and the elderly. In children (age 0 -16 years), 22% of all tubular bone hand fractures occurred somewhere within the first ray. In retirement age individuals (age Ͼ65 years), 20% of hand fractures occurred in the thumb, whereas only 12% of fractures in young adults (age 17-40 years) were found to occur in the thumb ray. First-ray fractures were half as common in the 17-to 40-year age group when compared with that for the elderly or the pediatric groups. In addition, in the elderly population, the thumb was the most common tubular bone fractured with fracture patterns tending to be oblique and intra-articular. RADIOGRAPHIC EVALUATION In addition to careful physical exam, radiographic imaging is an essential part of a complete evaluation after thumb trauma. Because the thumb sits out of plane from the rest of the hand and fingers, special radiographic views are necessary for appropriate evaluation. A true anteroposterior view of the thumb can be obtained with the Robert's view, which requires that the hand be hyperpronated so that the dorsum of the thumb lies against the radiographic plate. To obtain a true lateral of the TM joint, the palm of the hand must be placed flat on the cassette with the hand pronated 15°to 35°; the beam is then directed 15°distal to proximal. This imaging technique is referred to as the Bett's view of the thumb. This image allows one to evaluate the TM joint and the 3 additional articulations of the trapezium: the trapezoid, the scaphoid, and index metacarpal. Both views are helpful when evaluating fracture displacement and joint congruency. PHALANGEAL FRACTURES The management of extra-articular thumb phalangeal fractures differs from that of finger phalangeal fractures in that some angular displacement or malunion is ac

The Nuclear Spectral Energy Distribution of NGC 4395, The Least Luminous Type 1 Seyfert Galaxy

We present X-ray (ROSAT), infrared, and radio observations of NGC 4395, which harbors the optically least luminous type 1 Seyfert nucleus discovered thus far. In combination with published optical and ultraviolet spectra, we have used these data to assemble the broadband spectral energy distribution (SED) of the galaxy's nucleus. Interestingly, the SED of NGC 4395 differs markedly from the SEDs of both quasars and typical low-luminosity active galactic nuclei, which may be a manifestation of the different physical conditions (i.e., black hole masses, accretion rates, and/or accretion modes) that exist in these objects. The nuclear X-ray source in NGC 4395 is variable and has an observed luminosity of just ~ 10^38 ergs/s. Although this emission could plausibly be associated with either a weak active nucleus or a bright stellar-mass binary system, the optical and ultraviolet emission-line properties of the nucleus strongly suggest that the X-rays arise from a classical AGN.Comment: Accepted for publication in PASP (July 1999), 17 pages, including 4 Postscript figure

Low fitness partially explains resting metabolic rate differences between African American and white women

Background High levels of obesity among African American women have been hypothesized to be partially resultant from a lower resting metabolic rate compared with white women. The aim of the current study was to determine if differences in cardiorespiratory fitness and moderate-to-vigorous physical activity are associated with differences in resting metabolic rate among free-living young adult African American women and white women. Methods Participants were 179 women (white women n = 141, African American women n = 38, mean age = 27.7 years). Resting metabolic rate was measured using indirect calorimetry, body composition using dual energy x-ray absorptiometry, cardiorespiratory fitness via maximal treadmill test, and moderate-to-vigorous physical activity using an activity monitor. Results African American women had higher body mass index, fat mass, and fat-free mass compared with white women but lower levels of cardiorespiratory fitness. No differences were observed between African American and white women in resting metabolic rate when expressed as kcal/day (1390.8 ± 197.5 vs 1375.7 ± 173.6 kcal/day, P =.64), but African American women had a lower resting metabolic rate when expressed relative to body weight (2.56 ± 0.30 vs 2.95 ± 0.33 mL/kg/min,

De novo CNVs in bipolar affective disorder and schizophrenia

An increased rate of de novo copy number variants (CNVs) has been found in schizophrenia (SZ), autism and developmental delay. An increased rate has also been reported in bipolar affective disorder (BD). Here, in a larger BD sample, we aimed to replicate these findings and compare de novo CNVs between SZ and BD. We used Illumina microarrays to genotype 368 BD probands, 76 SZ probands and all their parents. Copy number variants were called by PennCNV and filtered for frequency (10 kb). Putative de novo CNVs were validated with the z-score algorithm, manual inspection of log R ratios (LRR) and qPCR probes. We found 15 de novo CNVs in BD (4.1% rate) and 6 in SZ (7.9% rate). Combining results with previous studies and using a cut-off of >100 kb, the rate of de novo CNVs in BD was intermediate between controls and SZ: 1.5% in controls, 2.2% in BD and 4.3% in SZ. Only the differences between SZ and BD and SZ and controls were significant. The median size of de novo CNVs in BD (448 kb) was also intermediate between SZ (613 kb) and controls (338 kb), but only the comparison between SZ and controls was significant. Only one de novo CNV in BD was in a confirmed SZ locus (16p11.2). Sporadic or early onset cases were not more likely to have de novo CNVs. We conclude that de novo CNVs play a smaller role in BD compared with SZ. Patients with a positive family history can also harbour de novo mutations

Verbal fluency in HIV infection: A meta-analytic review

Given the largely prefrontostriatal neuropathogenesis of HIV-associated neurobehavioral deficits, it is often presumed that HIV infection leads to greater impairment on letter versus category fluency. A meta-analysis of the HIV verbal fluency literature was conducted (k = 37, n = 7110) to assess this hypothesis and revealed generally small effect sizes for both letter and category fluency, which increased in magnitude with advancing HIV disease severity. Across all studies, the mean effect size of category fluency was slightly larger than that of letter fluency. However, the discrepancy between category and letter fluency dissipated in a more conservative analysis of only those studies that included both tests. Thus, HIV-associated impairments in letter and category fluency are of similar magnitude, suggesting that mild word generation deficits are evident in HIV, regardless of whether traditional letter or semantic cues are used to guide the word search and retrieval process (JINS, 2007, 13, 183–189.

Maximal Spontaneous Photon Emission and Energy Loss from Free Electrons

Free electron radiation such as Cerenkov, Smith--Purcell, and transition radiation can be greatly affected by structured optical environments, as has been demonstrated in a variety of polaritonic, photonic-crystal, and metamaterial systems. However, the amount of radiation that can ultimately be extracted from free electrons near an arbitrary material structure has remained elusive. Here we derive a fundamental upper limit to the spontaneous photon emission and energy loss of free electrons, regardless of geometry, which illuminates the effects of material properties and electron velocities. We obtain experimental evidence for our theory with quantitative measurements of Smith--Purcell radiation. Our framework allows us to make two predictions. One is a new regime of radiation operation---at subwavelength separations, slower (nonrelativistic) electrons can achieve stronger radiation than fast (relativistic) electrons. The second is a divergence of the emission probability in the limit of lossless materials. We further reveal that such divergences can be approached by coupling free electrons to photonic bound states in the continuum (BICs). Our findings suggest that compact and efficient free-electron radiation sources from microwaves to the soft X-ray regime may be achievable without requiring ultrahigh accelerating voltages.Comment: 7 pages, 4 figure

Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes

Background: Obesity and type 2 diabetes (T2D) are linked both with host genetics and with environmental factors, including dysbioses of the gut microbiota. However, it is unclear whether these microbial changes precede disease onset. Twin cohorts present a unique genetically-controlled opportunity to study the relationships between lifestyle factors and the microbiome. In particular, we hypothesized that family-independent changes in microbial composition and metabolic function during the sub-clinical state of T2D could be either causal or early biomarkers of progression. Methods: We collected fecal samples and clinical metadata from 20 monozygotic Korean twins at up to two time points, resulting in 36 stool shotgun metagenomes. While the participants were neither obese nor diabetic, they spanned the entire range of healthy to near-clinical values and thus enabled the study of microbial associations during sub-clinical disease while accounting for genetic background. Results: We found changes both in composition and in function of the sub-clinical gut microbiome, including a decrease in Akkermansia muciniphila suggesting a role prior to the onset of disease, and functional changes reflecting a response to oxidative stress comparable to that previously observed in chronic T2D and inflammatory bowel diseases. Finally, our unique study design allowed us to examine the strain similarity between twins, and we found that twins demonstrate strain-level differences in composition despite species-level similarities. Conclusions: These changes in the microbiome might be used for the early diagnosis of an inflamed gut and T2D prior to clinical onset of the disease and will help to advance toward microbial interventions