14 research outputs found
Additional file 1: Figure S1. of Novel soil-inhabiting clades fill gaps in the fungal tree of life
Full concatenated 18S and 28S rRNA gene phylogram. Figure S2. Full 18S rRNA gene phylogram. Figure S3. Full 28S rRNA gene phylogram. Figure S4. Best models of Random forest machine learning-based niche analysis of fungal clades and prominent branches. Figure S5. Histograms indicating the distribution of fungal clades (summed occurrences of OTUs) in sites with specified mean annual temperature. Figure S6. Histograms indicating the distribution of fungal clades (summed occurrences of OTUs) in sites with specified mean annual precipitation. Figure S7. Histograms indicating the distribution of fungal clades (summed occurrences of OTUs) in sites with specified soil pH. Figure S8. Histograms indicating the distribution of fungal clades (summed occurrences of OTUs) in sites with specified time since last fire, soil carbon content, and soil phosphorus concentration. Text S1. Profiles of undescribed clades and prominent branches of fungi. (PDF 10058Â kb
Additional file 2: Table S1. of Novel soil-inhabiting clades fill gaps in the fungal tree of life
Primers developed and used for this study. Table S2. List of environmental sources used in Additional file 1: Figures S1-S3 and accounted for in clade profiles (Text S1). Data S1. Metadata, clade assignment, and accessions of individual OTUs. (XLSX 1032Â kb
OTU matrix total fungi Abu and PA data
This file contains all the fungal OTUs recovered, including ECM and non ECM, abundance as well as presence-absence dat
Environmental data matirx (raw data)
This file contains information about raw environmental data associated with each sample
OTU matrix ECM fungi Abu and PA data
This file contains all the ECM fungal OTUs recovered, abundance as well as presence-absence dat
Illumina sequencing plate2
This file contains both forward (t2-UNIS_S1_L001_R1_001.fastq) and reverse (t2-UNIS_S1_L001_R2_001.fastq) Illumina read data and associated barcode mapping files. In Mapfile_T2 forward primer is linker primer and in Mapfile_T2_rev reverse primer is the linker primer to recover all the reads from mix orientation read data files. which is the case in our sequencing
Shared species analysis
R script for plotting shared species between sampling month
Shared species analysis EstimateS
OTU Data for shared analysis performed using Estimate
F_L001_R2.fastq
Paired-end Illumina seqeuncing output fastq file with reverse read