Nuclear ASTRALII tree

ASTRAL-II species tree, based on 272 single copy gene trees. 400 bootstrap replicates

Chloroplast alignment

Chloroplast alignment file

Gene trees

Gene trees produced from 272 single copy genes, using RAxML. Trees are the consensus of 500 bootstrap replicates (RAxML_bipartitions.*)

Gene alignments

Nucleotide alignments of 272 single copy genes

CrossSectionMeasurements

Cross section data generated from leaf cross sections, imaged using a Zeiss microscope and analyzed in ImageJ

Chloroplast tree

RAxML bipartition tree from chloroplast alignment. 500 bootstrap replicates

Agavoideae Polyploidy

Agavoideae Polyploid

Alignments of Orthologous and Paralogous Isolates for Allopolyploidy Identification in Andropogoneae

See ReadMe file

p450 Gene Tree Augustin et al. 2015

p450 Gene Tree Augustin et al. 201

Legume pairs - ksplots

Putative paralog pairs estimated from Ks plots for multiple species from study. These were used to test for other WGD events (other than PWGD). This is a tab delimited file with the first and second columns being Ks plot identified putative paralogs and the third column being a designation for the putative event