Whole-genome sequencing of <em>Oryza brachyantha</em> reveals mechanisms underlying <em>Oryza</em> genome evolution

The wild species of the genus Oryza contain a largely untapped reservoir of agronomically important genes for rice improvement. Here we report the 261-Mb de novo assembled genome sequence of Oryza brachyantha. Low activity of long-terminal repeat retrotransposons and massive internal deletions of ancient long-terminal repeat elements lead to the compact genome of Oryza brachyantha. We model 32,038 protein-coding genes in the Oryza brachyantha genome, of which only 70% are located in collinear positions in comparison with the rice genome. Analysing breakpoints of non-collinear genes suggests that double-strand break repair through non-homologous end joining has an important role in gene movement and erosion of collinearity in the Oryza genomes. Transition of euchromatin to heterochromatin in the rice genome is accompanied by segmental and tandem duplications, further expanded by transposable element insertions. The high-quality reference genome sequence of Oryza brachyantha provides an important resource for functional and evolutionary studies in the genus Oryza

Research Progress on the Interaction Mechanism of Pectin and Polyphenol and Their Effect on Food Processing Characteristics

The pectin and polyphenols that co-exist in plant-based food systems form complexes in natural conditions and interact quickly and spontaneously during food processing due to external forces, such as heating, high pressure, and drying. The interaction can affect the physicochemical properties and functional properties of foods. This review summarizes the mechanisms, multiple internal and external influencing factors, and main research methods involved in pectin and polyphenol interaction, while their adsorption behavior is described and quantitatively characterized using the isothermal adsorption model commonly used by Langmuir and Freundlich. In addition, the impact of pectin and polyphenol interaction on food processing characteristics and polyphenol bioavailability is also discussed, and the future research prospects and development trends in this field are analyzed

Hawthorn Juice Simulation System for Pectin and Polyphenol Adsorption Behavior: Kinetic Modeling Properties and Identification of the Interaction Mechanism

The interaction between polyphenols and polysaccharides plays an important role in increasing the turbidity stability of fruit juice and improving unpleasant sensory experiences. The binding adsorption behavior between hawthorn pectin (HP) and polyphenols (epicatechin and chlorogenic acid) accorded with the monolayer adsorption behavior driven by chemical action and were better fitted by pseudo-second order dynamic equation and Langmuir model. The HP binding sites (Qm) and adsorption capacity (Qe) to epicatechin were estimated at 75.188 and 293.627 &mu;g/mg HP, respectively, which was about nine and twelve times higher than that of chlorogenic acid. The interaction between HP and polyphenols exhibited higher turbidity characteristics, particle size and lower zeta potential than epicatechin and chlorogenic acid alone. Meanwhile, according to Fourier Transform Infrared Spectroscopy (FT-IR) analysis, it could be speculated that the interaction between HP and polyphenols resulted in chemical combination. Moreover, &Delta;H &lt; 0 and T&Delta;S &lt; 0, which indicated that the interaction between HP and polyphenols was mainly driven by hydrogen bonds and van der Waals forces

Research on the Dyeing Properties of Chinese Fir Using Ultrasonic-Assisted Mulberry Pigment Dyeing

Wood dyeing plays a crucial role in improving the aesthetic appeal of wood. To enhance the value of Chinese fir, this study used environmentally friendly mulberry pigment and ultrasonic technology to dye Chinese fir. A single-factor test was conducted to investigate the impact of ultrasonic power, dyeing temperature, dyeing time, and dye concentration on dye uptake and color difference. The results revealed that ultrasonic treatment significantly increased the dye uptake and color difference compared with conventional water bath dyeing methods. Based on the single-factor test, two indexes for the color fastness of washing and sun were added, and an orthogonal test was carried out. The range analysis results demonstrated that ultrasonic power had the greatest influence on dye uptake, while dye concentration showed the strongest impact on the color difference and color fastness in washing and sunlight. The dyeing process was optimized using the fuzzy comprehensive evaluation method, with the optimum parameters determined as follows: ultrasonic power of 340 W, dyeing temperature of 90 °C, dyeing time of 5 h, and dye concentration of 10%. Scanning electron microscopy revealed that ultrasound increased wood permeability and created cracks, providing attachment sites for dye molecules. Infrared analysis indicated that ultrasonic action enhanced the degradation of wood components, transforming them into smaller molecular substances and increasing the accessibility of dyes to wood. X-ray diffraction analysis demonstrated that ultrasonic action reduced wood crystallinity, facilitating the entry of dye molecules into Chinese fir fibers. In this study, we proposed for the first time to dye fir wood with mulberry pigment and use ultrasonic-assisted dyeing to investigate the effect of dyeing factors on the dyeing rate, color difference, and color fastness, which provides a valuable reference for natural pigment dyeing of Chinese fir