Online object oriented Monte Carlo computational tool for the needs of biomedical optics

Conceptual engineering design and optimization of laser-based imaging techniques and optical diagnostic systems used in the field of biomedical optics requires a clear understanding of the light-tissue interaction and peculiarities of localization of the detected optical radiation within the medium. The description of photon migration within the turbid tissue-like media is based on the concept of radiative transfer that forms a basis of Monte Carlo (MC) modeling. An opportunity of direct simulation of influence of structural variations of biological tissues on the probing light makes MC a primary tool for biomedical optics and optical engineering. Due to the diversity of optical modalities utilizing different properties of light and mechanisms of light-tissue interactions a new MC code is typically required to be developed for the particular diagnostic application. In current paper introducing an object oriented concept of MC modeling and utilizing modern web applications we present the generalized online computational tool suitable for the major applications in biophotonics. The computation is supported by NVIDEA CUDA Graphics Processing Unit providing acceleration of modeling up to 340 times

Propagation of coherent polarized light in turbid highly scattering medium

Within the framework of further development of unified Monte Carlo code for the needs of biomedical optics and biophotonics, we present an approach for modeling of coherent polarized light propagation in highly scattering turbid media, such as biological tissues. The temporal coherence of light, linear and circular polarization, interference, and the helicity flip of circularly polarized light due to reflection at the medium boundary and/ or backscattering events are taken into account. To achieve higher accuracy in the results and to speed up the modeling, the implementation of the code utilizes parallel computing on NVIDIA graphics processing units using Compute Unified Device Architecture. The results of the simulation of coherent linearly and circularly polarized light are presented in comparison with the results of known theoretical studies and the results of alternative modelings

Optical Tweezers in Studies of Red Blood Cells

Optical tweezers (OTs) are innovative instruments utilized for the manipulation of microscopic biological objects of interest. Rapid improvements in precision and degree of freedom of multichannel and multifunctional OTs have ushered in a new era of studies in basic physical and chemical properties of living tissues and unknown biomechanics in biological processes. Nowadays, OTs are used extensively for studying living cells and have initiated far-reaching influence in various fundamental studies in life sciences. There is also a high potential for using OTs in haemorheology, investigations of blood microcirculation and the mutual interplay of blood cells. In fact, in spite of their great promise in the application of OTs-based approaches for the study of blood, cell formation and maturation in erythropoiesis have not been fully explored. In this review, the background of OTs, their state-of-the-art applications in exploring single-cell level characteristics and bio-rheological properties of mature red blood cells (RBCs) as well as the OTs-assisted studies on erythropoiesis are summarized and presented. The advance developments and future perspectives of the OTs’ application in haemorheology both for fundamental and practical in-depth studies of RBCs formation, functional diagnostics and therapeutic needs are highlighted

Mutual interaction of red blood cells influenced by nanoparticles

Despite extensive studies on different types of nanoparticles as potential drug carriers, the application of red blood cells (RBCs) as natural transport agents for systemic drug delivery is considered a new paradigm in modern medicine and possesses great potential. There is a lack of studies on the influence of drug carriers of different compositions on RBCs, especially regarding their potential impact on human health. Here, we apply conventional microscopy to observe the formation of RBC aggregates and optical tweezers to quantitatively assess the mutual interaction of RBCs incubated with inorganic and polymeric nanoparticles. Scanning electron microscopy is utilized for direct observation of nanoparticle localization on RBC membranes. The experiments are performed in a platelet-free blood plasma mimicking the RBC natural environment. We show that nanodiamonds influence mutual RBC interactions more antagonistically than other nanoparticles, resulting in higher aggregation forces and the formation of larger cell aggregates. In contrast, polymeric particles do not cause anomalous RBC aggregation. The results emphasize the application of optical tweezers for the direct quantitative assessment of the mutual interaction of RBCs influenced by nanomaterials

Role of scattering and birefringence in phase retardation revealed by locus of Stokes vector on Poincaré sphere

SIGNIFICANCE: Biological tissues are typically characterized by high anisotropic scattering and may also exhibit linear form birefringence. Both scattering and birefringence bias the phase shift between transverse electric field components of polarized light. These phase alterations are associated with particular structural malformations in the tissue. In fact, the majority of polarization-based techniques are unable to distinguish the nature of the phase shift induced by birefringence or scattering of light. AIM: We explore the distinct contributions of scattering and birefringence in the phase retardation of circularly polarized light propagated in turbid tissue-like scattering medium. APPROACH: The circularly polarized light in frame of Stokes polarimetry approach is used for the screening of biotissue phantoms and chicken skin samples. The change of optical properties in chicken skin is accomplished by optical clearing, which reduces scattering, and mechanical stretch, which induces birefringence. The change of optical properties of skin tissue is confirmed by spectrophotometric measurements and second-harmonic generation imaging. RESULTS: The contributions of scattering and birefringence in the phase retardation of circularly polarized light propagated in biological tissues are distinguished by the locus of the Stokes vector mapped on the Poincaré sphere. The phase retardation of circularly polarized light due to scattering alterations is assessed. The value of birefringence in chicken skin is estimated as 0.3  ×  10  -  3, which agrees with alternative studies. The change of birefringence of skin tissue due to mechanical stretch in the order of 10  -  6 is detected. CONCLUSIONS: While the polarimetric parameters on their own do not allow distinguishing the contributions of scattering and birefringence, the resultant Stokes vector trajectory on the Poincaré sphere reveals the role of scattering and birefringence in the total phase retardation. The described approach, applied independently or in combination with Mueller polarimetry, can be beneficial for the advanced characterization of various types of malformations within biological tissues.</p

Author Correction:Mutual interaction of red blood cells influenced by nanoparticles (Scientific Reports, (2019), 9, 1, (5147), 10.1038/s41598-019-41643-x)

A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper

Influence of probe pressure on diffuse reflectance spectra of human skin measured in vivo

Mechanical pressure superficially applied on the human skin surface by a fiber-optic probe influences the spatial distribution of blood within the cutaneous tissues. Upon gradual load of weight on the probe, a stepwise increase in the skin reflectance spectra is observed. The decrease in the load follows the similar inverse staircase-like tendency. The observed stepwise reflectance spectra changes are due to, respectively, sequential extrusion of blood from the topical cutaneous vascular beds and their filling afterward. The obtained results are confirmed by Monte Carlo modeling. This implies that pressure-induced influence during the human skin diffuse reflectance spectra measurements in vivo should be taken into consideration, in particular, in the rapidly developing area of wearable gadgets for real-time monitoring of various human body parameters

Monitoring of interaction of low-frequency electric field with biological tissues upon optical clearing with optical coherence tomography

The influence of a low-frequency electric field applied to soft biological tissues ex vivo at normal conditions and upon the topical application of optical clearing agents has been studied by optical coherence tomography (OCT). The electro-kinetic response of tissues has been observed and quantitatively evaluated by the double correlation OCT approach, utilizing consistent application of an adaptive Wiener filtering and Fourier domain correlation algorithm. The results show that fluctuations, induced by the electric field within the biological tissues are exponentially increased in time. We demonstrate that in comparison to impedance measurements and the mapping of the temperature profile at the surface of the tissue samples, the double correlation OCT approach is much more sensitive to the changes associated with the tissues' electro-kinetic response. We also found that topical application of the optical clearing agent reduces the tissues' electro-kinetic response and is cooling the tissue, thus reducing the temperature induced by the electric current by a few degrees. We anticipate that dcOCT approach can find a new application in bioelectrical impedance analysis and monitoring of the electric properties of biological tissues, including the resistivity of high water content tissues and its variations

Propagation of Cylindrical Vector Laser Beams in Turbid Tissue-Like Scattering Media

We explore the propagation of the cylindrical vector beams (CVB) in turbid tissue-like scattering medium in comparison with the conventional Gaussian laser beam. The study of propagation of CVB and Gaussian laser beams in the medium is performed utilizing the unified electric field Monte Carlo model. The implemented Monte Carlo model is a part of a generalized on-line computational tool and utilizes parallel computing, executed on the NVIDIA Graphics Processing Units (GPUs) supporting Compute Unified Device Architecture (CUDA). Using extensive computational studies, we demonstrate that after propagation through the turbid tissue-like scattering medium, the degree of fringe contrast for CVB becomes at least twice higher in comparison to the conventional linearly polarized Gaussian beam. The results of simulations agree with the results of experimental studies. Both experimental and theoretical results suggest that there is a high potential of the application of CVB in the diagnosis of biological tissues