Reduced search space multiple shift maximum element sequential matrix diagonalisation algorithm

The Multiple Shift Maximum Element Sequential Matrix Diagonalisation (MSME-SMD) algorithm is a powerful but costly method for performing approximate polynomial eigenvalue decomposition (PEVD) for space-time covariance-type matrices encountered in e.g. broadband array processing. This paper discusses a newly developed search method that restricts the order growth within the MSME-SMD algorithm. In addition to enhanced control of the polynomial degree of the paraunitary and parahermitian factors in this decomposition, the new search method is also computationally less demanding as fewer elements are searched compared to the original while the excellent diagonalisation of MSME-SMD is maintained

Impact of source model matrix conditioning on iterative PEVD algorithms

Polynomial parahermitian matrices can accurately and elegantly capture the space-time covariance in broadband array problems. To factorise such matrices, a number of polynomial EVD (PEVD) algorithms have been suggested. At every step, these algorithms move various amounts of off-diagonal energy onto the diagonal, to eventually reach an approximate diagonalisation. In practical experiments, we have found that the relative performance of these algorithms depends quite significantly on the type of parahermitian matrix that is to be factorised. This paper aims to explore this performance space, and to provide some insight into the characteristics of PEVD algorithms

Blood Flow in silico: From Single Cells to Blood Rheology

This paper was presented at the 4th Micro and Nano Flows Conference (MNF2014), which was held at University College, London, UK. The conference was organised by Brunel University and supported by the Italian Union of Thermofluiddynamics, IPEM, the Process Intensification Network, the Institution of Mechanical Engineers, the Heat Transfer Society, HEXAG - the Heat Exchange Action Group, and the Energy Institute, ASME Press, LCN London Centre for Nanotechnology, UCL University College London, UCL Engineering, the International NanoScience Community, www.nanopaprika.eu.Mesoscale hydrodynamics simulations of red blood cells under flow have provided much new insight into their shapes and dynamics in microchannel flow. The presented results range from the behavior of single cells in confinement and the shape changes in sedimentation, to the clustering and arrangement of many cells in microchannels and the viscosity of red blood cell suspensions under shear flow. The interaction of red blood cells with other particles and cells, such as white blood cells, platelets, and drug carriers, shows an essential role of red blood cells in the margination of other blood components

The Diagnostic Potential of Transition Region Lines under-going Transient Ionization in Dynamic Events

We discuss the diagnostic potential of high cadence ultraviolet spectral data when transient ionization is considered. For this we use high cadence UV spectra taken during the impulsive phase of a solar flares (observed with instruments on-board the Solar Maximum Mission) which showed excellent correspondence with hard X-ray pulses. The ionization fraction of the transition region ion O V and in particular the contribution function for the O V 1371A line are computed within the Atomic Data and Analysis Structure, which is a collection of fundamental and derived atomic data and codes which manipulate them. Due to transient ionization, the O V 1371A line is enhanced in the first fraction of a second with the peak in the line contribution function occurring initially at a higher electron temperature than in ionization equilibrium. The rise time and enhancement factor depend mostly on the electron density. The fractional increase in the O V 1371A emissivity due to transient ionization can reach a factor of 2--4 and can explain the fast response in the line flux of transition regions ions during the impulsive phase of flares solely as a result of transient ionization. This technique can be used to diagnostic the electron temperature and density of solar flares observed with the forth-coming Interface Region Imaging Spectrograph.Comment: 18 pages, 6 figure

SLC19A1 transports immunoreactive cyclic dinucleotides.

The accumulation of DNA in the cytosol serves as a key immunostimulatory signal associated with infections, cancer and genomic damage1,2. Cytosolic DNA triggers immune responses by activating the cyclic GMP-AMP synthase (cGAS)-stimulator of interferon genes (STING) pathway3. The binding of DNA to cGAS activates its enzymatic activity, leading to the synthesis of a second messenger, cyclic guanosine monophosphate-adenosine monophosphate (2'3'-cGAMP)4-7. This cyclic dinucleotide (CDN) activates STING8, which in turn activates the transcription factors interferon regulatory factor 3 (IRF3) and nuclear factor κ-light-chain-enhancer of activated B cells (NF-κB), promoting the transcription of genes encoding type I interferons and other cytokines and mediators that stimulate a broader immune response. Exogenous 2'3'-cGAMP produced by malignant cells9 and other CDNs, including those produced by bacteria10-12 and synthetic CDNs used in cancer immunotherapy13,14, must traverse the cell membrane to activate STING in target cells. How these charged CDNs pass through the lipid bilayer is unknown. Here we used a genome-wide CRISPR-interference screen to identify the reduced folate carrier SLC19A1, a folate-organic phosphate antiporter, as the major transporter of CDNs. Depleting SLC19A1 in human cells inhibits CDN uptake and functional responses, and overexpressing SLC19A1 increases both uptake and functional responses. In human cell lines and primary cells ex vivo, CDN uptake is inhibited by folates as well as two medications approved for treatment of inflammatory diseases, sulfasalazine and the antifolate methotrexate. The identification of SLC19A1 as the major transporter of CDNs into cells has implications for the immunotherapeutic treatment of cancer13, host responsiveness to CDN-producing pathogenic microorganisms11 and-potentially-for some inflammatory diseases

Properties and structure of the analytic singular value decomposition

We investigate the singular value decomposition (SVD) of a rectangular matrix A(z) of functions that are analytic on an annulus that includes at least the unit circle. Such matrices occur, e.g., as matrices of transfer functions representing broadband multiple-input multiple-output systems. Our analysis is based on findings for the analytic SVD applicable to continuous time systems, and on the analytic eigenvalue decomposition. Using these, we establish two potentially overlapping cases where analyticity of the SVD factors is denied. Firstly, from a structural point of view, multiplexed systems require oversampling by the multiplexing factor in order to admit an analytic solution. Secondly, from an algebraic perspective, we state under which condition spectral zeroes of any singular value require additional oversampling by a factor of two if an analytic solution is to be found. In all other cases, an analytic matrix admits an analytic SVD, whereby the singular values are unique up to a permutation, and the left- and right-singular vectors are coupled through a joint ambiguity w.r.t.~an arbitrary allpass function. We demonstrate how some state-of-the-art polynomial matrix decomposition algorithms approximate this solution, motivating the need for dedicated algorithms

The Murchison Widefield Array Transients Survey (MWATS). A search for low frequency variability in a bright Southern hemisphere sample

We report on a search for low-frequency radio variability in 944 bright (> 4Jy at 154 MHz) unresolved, extragalactic radio sources monitored monthly for several years with the Murchison Widefield Array. In the majority of sources we find very low levels of variability with typical modulation indices < 5%. We detect 15 candidate low frequency variables that show significant long term variability (>2.8 years) with time-averaged modulation indices M = 3.1 - 7.1%. With 7/15 of these variable sources having peaked spectral energy distributions, and only 5.7% of the overall sample having peaked spectra, we find an increase in the prevalence of variability in this spectral class. We conclude that the variability seen in this survey is most probably a consequence of refractive interstellar scintillation and that these objects must have the majority of their flux density contained within angular diameters less than 50 milli-arcsec (which we support with multi-wavelength data). At 154 MHz we demonstrate that interstellar scintillation time-scales become long (~decades) and have low modulation indices, whilst synchrotron driven variability can only produce dynamic changes on time-scales of hundreds of years, with flux density changes less than one milli-jansky (without relativistic boosting). From this work we infer that the low frequency extra-galactic southern sky, as seen by SKA-Low, will be non-variable on time-scales shorter than one year.Comment: 19 pages, 11 figure

Pregnancy Rates, Metabolites and Metabolic Hormones in Bighorn Sheep During and After the Breeding Season

Wildlife managers routinely draw blood and harvest serum when bighorn sheep (Ovis canadensis) and other ungulates are captured for management and research purposes.  Serum samples are routinely submitted to state livestock labs that perform a panel of assays to access exposure to a variety of important pathogens that cause disease, providing managers important insights.  Wildlife managers would also benefit from similar procedures that could provide assessments of reproduction, nutrition, and physiological status.  The objectives of this preliminary study were to evaluate pregnancy rates, energy-related metabolites and hormones among herds of Montana and Wyoming bighorn sheep during and after the breeding season in order to assess the general ‘health’ of herds. Metabolites and metabolic hormones are frequently used in domestic animals to evaluate nutrition, reproduction and energy balance, and potentially may provide the same insights in wildlife for managers. A total of 240 bighorn ewes were sampled from 13 herds between December 2014 and March 2015.  Samples were assayed for progesterone (P4) and pregnancy specific protein B (PSPBs) to assess reproductive cycling and pregnancy. Assays were also performed for non-esterified fatty acid, insulin, triiodothyronine and thyroxine which are metabolites and metabolic hormones that indicate nutritional and energy states of animals. We will be presenting the results of this preliminary study and discussing the relationship between pregnancy rates, energy-related metabolites and hormones and how they might be used to inform wildlife management