Motion clouds: model-based stimulus synthesis of natural-like random textures for the study of motion perception

Choosing an appropriate set of stimuli is essential to characterize the response of a sensory system to a particular functional dimension, such as the eye movement following the motion of a visual scene. Here, we describe a framework to generate random texture movies with controlled information content, i.e., Motion Clouds. These stimuli are defined using a generative model that is based on controlled experimental parametrization. We show that Motion Clouds correspond to dense mixing of localized moving gratings with random positions. Their global envelope is similar to natural-like stimulation with an approximate full-field translation corresponding to a retinal slip. We describe the construction of these stimuli mathematically and propose an open-source Python-based implementation. Examples of the use of this framework are shown. We also propose extensions to other modalities such as color vision, touch, and audition

The relativistic solar particle event of 2005 January 20: origin of delayed particle acceleration

The highest energies of solar energetic nucleons detected in space or through gamma-ray emission in the solar atmosphere are in the GeV range. Where and how the particles are accelerated is still controversial. We search for observational information on the location and nature of the acceleration region(s) by comparing the timing of relativistic protons detected on Earth and radiative signatures in the solar atmosphere during the particularly well-observed 2005 Jan. 20 event. This investigation focuses on the post-impulsive flare phase, where a second peak was observed in the relativistic proton time profile by neutron monitors. This time profile is compared in detail with UV imaging and radio spectrography over a broad frequency band from the low corona to interplanetary space. It is shown that the late relativistic proton release to interplanetary space was accompanied by a distinct new episode of energy release and electron acceleration in the corona traced by the radio emission and by brightenings of UV kernels. These signatures are interpreted in terms of magnetic restructuring in the corona after the coronal mass ejection passage. We attribute the delayed relativistic proton acceleration to magnetic reconnection and possibly to turbulence in large-scale coronal loops. While Type II radio emission was observed in the high corona, no evidence of a temporal relationship with the relativistic proton acceleration was found

Interplanetary Magnetic Field Guiding Relativistic Particles

The origin and the propagation of relativistic solar particles (0.5 to few Ge V) in the interplanetary medium remains a debated topic. These relativistic particles, detected at the Earth by neutron monitors have been previously accelerated close to the Sun and are guided by the interplanetary magnetic field (IMF) lines, connecting the acceleration site and the Earth. Usually, the nominal Parker spiral is considered for ensuring the magnetic connection to the Earth. However, in most GLEs the IMF is highly disturbed, and the active regions associated to the GLEs are not always located close to the solar footprint of the nominal Parker spiral. A possible explanation is that relativistic particles are propagating in transient magnetic structures, such as Interplanetary Coronal Mass Ejections (ICMEs). In order to check this interpretation, we studied in detail the interplanetary medium where the particles propagate for 10 GLEs of the last solar cycle. Using the magnetic field and the plasma parameter measurements (ACE/MAG and ACE/SWEPAM), we found widely different IMF configurations. In an independent approach we develop and apply an improved method of the velocity dispersion analysis to energetic protons measured by SoHO/ERNE. We determined the effective path length and the solar release time of protons from these data and also combined them with the neutron monitor data. We found that in most of the GLEs, protons propagate in transient magnetic structures. Moreover, the comparison between the interplanetary magnetic structure and the interplanetary length suggest that the timing of particle arrival at Earth is dominantly determined by the type of IMF in which high energetic particles are propagating. Finally we find that these energetic protons are not significantly scattered during their transport to Earth

Synchronous Behavior of Two Coupled Electronic Neurons

We report on experimental studies of synchronization phenomena in a pair of analog electronic neurons (ENs). The ENs were designed to reproduce the observed membrane voltage oscillations of isolated biological neurons from the stomatogastric ganglion of the California spiny lobster Panulirus interruptus. The ENs are simple analog circuits which integrate four dimensional differential equations representing fast and slow subcellular mechanisms that produce the characteristic regular/chaotic spiking-bursting behavior of these cells. In this paper we study their dynamical behavior as we couple them in the same configurations as we have done for their counterpart biological neurons. The interconnections we use for these neural oscillators are both direct electrical connections and excitatory and inhibitory chemical connections: each realized by analog circuitry and suggested by biological examples. We provide here quantitative evidence that the ENs and the biological neurons behave similarly when coupled in the same manner. They each display well defined bifurcations in their mutual synchronization and regularization. We report briefly on an experiment on coupled biological neurons and four dimensional ENs which provides further ground for testing the validity of our numerical and electronic models of individual neural behavior. Our experiments as a whole present interesting new examples of regularization and synchronization in coupled nonlinear oscillators.Comment: 26 pages, 10 figure

Magnetostrictive hysteresis of TbCo/CoFe multilayers and magnetic domains

Magnetic and magnetostrictive hysteresis loops of TbCo/CoFe multilayers under field applied along the hard magnetization axis are studied using vectorial magnetization measurements, optical deflectometry and magneto optical Kerr microscopy. Even a very small angle misalignment between hard axis and magnetic field direction is shown to drastically change the shape of magnetization and magnetostrictive torsion hysteresis loops. Two kinds of magnetic domains are revealed during the magnetization: big regions with opposite rotation of spontaneous magnetization vector and spontaneous magnetic domains which appear in a narrow field interval and provide an inversion of this rotation. We show that the details of the hysteresis loops of our exchange-coupled films can be described using the classical model of homogeneous magnetization rotation of single uniaxial films and the configuration of observed domains. The understanding of these features is crucial for applications (for MEMS or microactuators) which benefit from the greatly enhanced sensitivity near the point of magnetic saturation at the transverse applied field.Comment: 10 pages, 11 figure

How effective are experienced hepatologists at staging fibrosis using non-invasive fibrosis tests in patients with metabolic dysfunction-associated steatotic liver disease?

\ua9 2024 The Author(s). Alimentary Pharmacology & Therapeutics published by John Wiley & Sons Ltd. Background: Sequential use of non-invasive fibrosis tests (NITs) to identify patients with advanced hepatic fibrosis is recommended. However, it remains unclear how reliable clinicians are staging liver fibrosis using combinations of NITs. Aim: Our aim was to assess concordance between NIT-based ‘clinician fibrosis assessment (CFA)’ and histology in patients with metabolic dysfunction-associated steatotic liver disease (MASLD) and compare this with established algorithmic approaches. Methods: Six experienced hepatologists independently staged 230 MASLD patients for advanced fibrosis (F0-2 vs F3-4) using FIB-4, FIB-4+ELF, FIB-4+ vibration controlled transient elastography (VCTE; Fibroscan™) and FIB-4+ELF+VTCE. Concordance between histology and CFA or algorithmic approaches were assessed. Results: A total of 230 patients were included (median age 54 [22–78] years; 55% female; median FIB-4 1.21 [IQR: 0.78–1.91]; ELF 9.3 [IQR: 8.6–10.2]; VCTE 9.4 [IQR: 6.3–14.3]; 41% F0-1, 22% F2, 21% F3 and 16% F4). Overall, area under the receiver operator curves for histologic F3-4 for the raw tests were 0.84 for FIB-4, 0.86 for ELF and 0.86 for VCTE. Concordance between the hepatologists was good (FIB4, κ = 0.64; FIB-4+ELF, κ = 0.70; FIB-4+VCTE, κ = 0.69; FIB-4+ELF+VCTE, κ = 0.70). Concordance between individual CFA and histology was variable, which was reflected in variability in sensitivity (44%–84%) and specificity (76%–94%). Concordance with histology was better when clinicians used NIT combinations. Purely algorithmic approaches, particularly sequential use of FIB-4 then VCTE, tended to perform better than the CFA. Conclusions: Adhering to the recommended algorithmic approaches using NITs to stage fibrosis tended to perform more accurately than less-structured clinician NIT-based assessments conducted by experienced hepatologists

Nouvelles trappes à sédiment destinées aux milieux peu profonds vidangeables

Les mesures de taux de sédimentation en milieux aquatiques peu profonds sont rares et sont souvent réalisées à l'aide de méthodes inadaptées. Les trappes à sédiment utilisées ont au minimum 25 cm de haut. Par conséquent, pour beaucoup de milieux peu profonds, plus de 25 % de la colonne d'eau ne sont pas échantillonnés. Nous avons pallié ce problème en développant un réceptacle mis en place dans les sédiments et destiné à recevoir des trappes à sédiment cylindriques. Le sommet des trappes peut alors être situé à moins de 5 cm de la surface des sédiments. Ce système est utilisable pour des milieux de profondeur inférieure à cinq mètres. Nos résultats montrent que les trappes à sédiments généralement utilisées sous-estiment de 35 à 79 % du taux de sédimentation. Les particules négligées proviennent des flux sédimentaires primaire et secondaire.Sediment traps are a unique tool that can be used to investigate particle settling flux throughout the water column, whereas other methods such as sediment dating can only measure accumulation rates of bottom sediments. Several works on trapping efficiency have shown that cylindrical traps with height/diameter ratio greater than to 5 (10 in turbulent systems) are the more appropriate instruments to correctly measure the downward settling flux of particulate matter. Furthermore, traps with a diameter narrower than 5 cm should be avoided. It is well documented that bottle-type vessels overestimate the settling sediment whereas funnels and flat containers underestimate it. All this support the idea that an ideal trap must be at least 25 cm high, and in this sense, numerous studies investigating shallow aquatic systems have neglected a large proportion of the water column. Consequently, mechanical and biological processes occurring in this layer of the water column have not been taken into accountWe have overcome this problem with a structure composed of two parts (figure 2).The first part is a receptacle (bucket) buried in the sediment and intended to receive cylindrical traps. The top of the receptacle is placed 2 cm above the sediment. A guide made of a rope covered with a PVC tube is placed in the centre of the receptacle. This receptacle is intended to receive cylindrical traps whose tops stand less than 5 cm higher than the surface of the sediments.The second part is composed of seven cylinders (height/diameter ratio=10) which are fixed in a PVC disc 600 mm in diameter and 15 mm deep. The cylinders are placed around the central axis of the PVC disc. The bottom of the cylinders is closed with a removable polyethylene cap. Another cylinder, through which the guide can slide, is placed on the central axis. The bottom part of this last cylinder is ballasted with concrete. The stability of this second part, during both deposition and removal steps, is ensured by the low density of the PVC disc, the ballast at the bottom of the central cylinder, and the symmetry of the structure. This removable part may be lifted from the receptacle with three 2 mm diameter ropes attached to the PVC disc and fixed to a float. This apparatus may be used as deep as five meters.The sediment traps were tested in two extensively-managed fish ponds in North-Eastern France. Our investigations showed that tubes with a diameter between 26 and 140 mm could be efficiently used to estimate the sedimentation rate, whereas cylinders with a narrower diameter missed a large amount of particles. The use of tubes with a diameter above 50 mm, which is preferable for the study of turbulent systems, seems to allow the collection of sufficient sediment during a short period of time. We selected tubes with a diameter of 57 mm, which made it possible to handle them easily during the removal. Our investigations showed that in turbulent systems and for high sedimentation rates (> 5 kg·m-2 ·month-1), the top of the cylinders must be placed 1 cm above the top of the PVC disc. When considering low sedimentation rates (< 5 kg·m-2 ·month-1), we did not observe any significant differences between the cylinders placed 0 and 1 cm above the PVC disc.Complementary investigations were conducted in order to compare sedimentation rates estimated 1) by the apparatus we designed, in which the top of the cylinders was placed 5 cm above the sediment surface, 2) by traditional traps (57 mm in diameter and a height/diameter ratio of 5) in which the top of the cylinders was 28.5 cm above the sediment surface.These results showed that in shallow systems (1.2 m deep), traditional traps underestimate the downward settling flux of particulate matter by 35 to 79%. Furthermore, we compared the organic matter content of the sediment collected by the two types of traps with the organic matter content of bottom sediment, suspended particles, and submerged macrophytes. Results showed that the underestimation of particles was not only due to the resuspension of bottom sediment, but also to the sedimentation of phytoplankton and submerged macrophyte fragments which are not collected by the traditional traps

Effect of antibiotics on mechanical properties of Bordetella pertussis examined by atomic force microscopy.

In recent years, the coevolution of microorganisms with current antibiotics has increased the mechanisms of bacterial resistance, generating a major health problem worldwide. Bordetella pertussis is a bacterium that causes whooping cough and is capable of adopting different states of virulence, i.e. virulent or avirulent states. In this study, we explored the nanomechanical properties of both virulent and avirulent B. pertussis as exposed to various antibiotics. The nanomechanical studies highlighted that only virulent B. pertussis cells undergo a decrease in their cell elastic modulus and height upon antimicrobial exposure, whereas their avirulent counterparts remain unaffected. This study also permitted to highlight different mechanical properties of individual cells as compared to those growing in close contact with other individuals. In addition, we analyzed the presence on the bacterial cell wall of Filamentous hemagglutinin adhesin (FHA), the major attachment factor produced by virulent Bordetella spp., under different virulence conditions by Force Spectroscopy