Complete mitochondrial genomes and updated divergence time of the two freshwater clupeids endemic to Lake Tanganyika (Africa) suggest intralacustrine speciation

acceptedVersio

Monogenean parasites of sardines in Lake Tanganyika : diversity, origin and intraspecific variability

publishedVersio

Weak population structure and recent demographic expansion of the monogenean parasite Kapentagyrus spp. infecting clupeid fishes of Lake Tanganyika, East Africa

Author's accepted version (postprint).This is an Accepted Manuscript of an article published by Elsevier in International Journal for Parasitology on 08/04/2020.Available online: https://www.sciencedirect.com/science/article/pii/S0020751920300606?via%3DihubLake Tanganyika, East Africa, is the oldest and deepest African Great Lake and harbours one of the most diverse fish assemblages on earth. Two clupeid fishes, Limnothrissa miodon and Stolothrissa tanganicae, constitute a major part of the total fish catch, making them indispensable for local food security. Parasites have been proposed as indicators of stock structure in highly mobile pelagic hosts. We examined the monogeneans Kapentagyrus limnotrissae and Kapentagyrus tanganicanus (Dactylogyridae) infecting these clupeids to explore the parasites’ lake-wide population structure and patterns of demographic history. Samples were collected at seven sites distributed across three sub-basins of the lake. Intraspecific morphological variation of the monogeneans (n = 380) was analysed using morphometrics and geomorphometrics of sclerotised structures. Genetic population structure of both parasite species (n = 246) was assessed based on a 415 bp fragment of the mitochondrial cytochrome c oxidase subunit I (COI) gene. Overall, we observed a lack of clear geographical morphological differentiation in both parasites along a north–south axis. This lack of geographical population structure was also reflected by a large proportion of shared haplotypes, and a pattern of seemingly unrestricted gene flow between populations. Significant morphological and genetic differentiation between some populations might reflect temporal differentiation rather than geographical isolation. Overall, the shallow population structure of both species of Kapentagyrus reflects the near-panmictic population structure of both host species as previously reported. Morphological differences related to host species identity of K. tanganicanus were consistent with incipient speciation at the genetic level. Both parasite species experienced a recent demographic expansion, which might be linked to paleohydrological events. Finally, interspecific hybridisation was found in Kapentagyrus, representing the first case in dactylogyrid monogeneans.acceptedVersio

Kajian potensi ekstrak bilberi sebagai penunjuk pH untuk memantau kesegaran makanan secara kromametri

Penunjuk pH sebagai suatu pendekatan untuk memantau kualiti atau kesegaran makanan semasa telah mendapat perhatian industri pembungkusan makanan. Penggunaan sumber semula jadi pigmen tumbuhan terutamanya daripada buah-buahan dan sayur-sayuran menjadi pilihan para pengguna untuk menggantikan pewarna sintetik dalam memastikan keselamatan makanan yang diambil setiap hari. Dalam kajian ini, ekstrak daripada bilberi telah digunakan sebagai pewarna sensitif pH. Perubahan warna sampel dikaji secara terperinci melalui kaedah kromametri dan juga kaedah spektrofotometri ultra-lembayung nampak. Warna merah terang terhasil dalam pH berasid, merah pudar pada neutral dan magenta ke kuning dalam pH beralkali. Keputusan kajian kromametri menunjukkan bahawa ekstrak bilberi berupaya mempamerkan perubahan warna yang jelas terhadap perubahan pH, iaitu terdapat perubahan nilai warna a* yang menyumbang kepada perubahan yang bererti dalam perbezaan warna keseluruhan (ΔE*). Nilai ΔE* juga ditentukan wujud hubungan linear dan kuantitatif terhadap julat pH tertentu. Oleh yang demikian, ekstrak bilberi didapati berpotensi sebagai bahan sensor untuk pH dalam membangunkan satu sensor pH bagi memantau kesegaran makanan terutamanya hasilan laut berbungkus memandangkan tahap kerosakan produk tersebut berkait rapat dengan perubahan pH ke arah alkali

Environmental impacts of tilapia fish cage aquaculture on water physico-chemical parameters of Lake Kivu, Democratic Republic of the Congo

In Africa, cage aquaculture has been growing due to its potential to address food insecurity concerns, provide livelihoods, and contribute to local economies. However, there is a need for continued research on the sustainability and potential ecological effects of cage aquaculture in African lakes and reservoirs. Even with an adequate amount of water, lakes and reservoirs cannot provide ecosystem services if their water quality is not properly managed. The current study on Lake Kivu, DRC focuses on understanding the effects of tilapia cage aquaculture on selected water quality physico-chemical parameters in the Bukavu sub-basin, DRC. The research was conducted in both caged and uncaged sampling stations, on the spatial and temporal scale from April to September 2023 at three bays serving as sampling stations: two caged (Ndendere, Honga) and one non-caged (Nyofu). Some physico-chemical parameters were measured in situ, whereas chlorophyll a and nutrients analysis were performed at the Institut Supérieur Pédagogique (I.S.P) laboratory in Bukavu. The parameters were used to calculate three indices water quality indices: the water quality index (WQI) to classify the water quality at the stations, the organic pollution index (OPI) to determine the level of organic pollution, the Carlson's Trophic Status Index (CTSI) to classify the trophic state of the stations. Chlorophyll a concentration was a measure of algal biomass. All physico-chemical parameters, apart from DO, ammonium and temperature showed no significant differences among stations and depths. Interaction between stations and between seasons was only observed on turbidity. The WQI for all the sampling stations ranged from medium to good quality (51–90). The OPI for all stations showed minimal level of pollution (4.6–5.0) hence lake's water still organically unpolluted. CTSI results indicated the sampling stations are in a eutrophic state (50 to 70). Fish cage aquaculture does not yet pose harm to the water quality of the two Lake Kivu stations under consideration, according to the study's findings. However with the anticipated growth of cage fish farming activities to meet the rising fish demand, continuous monitoring of water quality in the Lake should be done to inform management decisions and for sustainable aquaculture

Table_1_Environmental impacts of tilapia fish cage aquaculture on water physico-chemical parameters of Lake Kivu, Democratic Republic of the Congo.docx

In Africa, cage aquaculture has been growing due to its potential to address food insecurity concerns, provide livelihoods, and contribute to local economies. However, there is a need for continued research on the sustainability and potential ecological effects of cage aquaculture in African lakes and reservoirs. Even with an adequate amount of water, lakes and reservoirs cannot provide ecosystem services if their water quality is not properly managed. The current study on Lake Kivu, DRC focuses on understanding the effects of tilapia cage aquaculture on selected water quality physico-chemical parameters in the Bukavu sub-basin, DRC. The research was conducted in both caged and uncaged sampling stations, on the spatial and temporal scale from April to September 2023 at three bays serving as sampling stations: two caged (Ndendere, Honga) and one non-caged (Nyofu). Some physico-chemical parameters were measured in situ, whereas chlorophyll a and nutrients analysis were performed at the Institut Supérieur Pédagogique (I.S.P) laboratory in Bukavu. The parameters were used to calculate three indices water quality indices: the water quality index (WQI) to classify the water quality at the stations, the organic pollution index (OPI) to determine the level of organic pollution, the Carlson's Trophic Status Index (CTSI) to classify the trophic state of the stations. Chlorophyll a concentration was a measure of algal biomass. All physico-chemical parameters, apart from DO, ammonium and temperature showed no significant differences among stations and depths. Interaction between stations and between seasons was only observed on turbidity. The WQI for all the sampling stations ranged from medium to good quality (51–90). The OPI for all stations showed minimal level of pollution (4.6–5.0) hence lake's water still organically unpolluted. CTSI results indicated the sampling stations are in a eutrophic state (50 to 70). Fish cage aquaculture does not yet pose harm to the water quality of the two Lake Kivu stations under consideration, according to the study's findings. However with the anticipated growth of cage fish farming activities to meet the rising fish demand, continuous monitoring of water quality in the Lake should be done to inform management decisions and for sustainable aquaculture.</p

First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae : a lack of population structure calls for integrated management of this important fisheries target species

BackgroundClupeid fisheries in Lake Tanganyika (East Africa) provide food for millions of people in one of the world's poorest regions. Due to climate change and overfishing, the clupeid stocks of Lake Tanganyika are declining. We investigate the population structure of the Lake Tanganyika sprat Stolothrissa tanganicae, using for the first time a genomic approach on this species. This is an important step towards knowing if the species should be managed separately or as a single stock. Population structure is important for fisheries management, yet understudied for many African freshwater species. We hypothesize that distinct stocks of S. tanganicae could be present due to the large size of the lake (isolation by distance), limnological variation (adaptive evolution), or past separation of the lake (historical subdivision). On the other hand, high mobility of the species and lack of obvious migration barriers might have resulted in a homogenous population.ResultsWe performed a population genetic study on wild-caught S. tanganicae through a combination of mitochondrial genotyping (96 individuals) and RAD sequencing (83 individuals). Samples were collected at five locations along a north-south axis of Lake Tanganyika. The mtDNA data had low global FST and, visualised in a haplotype network, did not show phylogeographic structure. RAD sequencing yielded a panel of 3504 SNPs, with low genetic differentiation (F-ST=0.0054; 95% CI: 0.0046-0.0066). PCoA, fineRADstructure and global F-ST suggest a near-panmictic population. Two distinct groups are apparent in these analyses (F-ST=0.1338 95% CI: 0.1239,0.1445), which do not correspond to sampling locations. Autocorrelation analysis showed a slight increase in genetic difference with increasing distance. No outlier loci were detected in the RADseq data.ConclusionOur results show at most very weak geographical structuring of the stock and do not provide evidence for genetic adaptation to historical or environmental differences over a north-south axis. Based on these results, we advise to manage the stock as one population, integrating one management strategy over the four riparian countries. These results are a first comprehensive study on the population structure of these important fisheries target species, and can guide fisheries management.Peer reviewe