Effect of iron deficiency on the localization of phosphoenolpyruvate carboxylase in common bean nodules

Phosphoenolpyruvate carboxylase (PEPC) plays an important role in nodules, when there is an increase in the demand for energy. This enzyme provides carbon skeletons to sustain amino acid synthesis and malate to support energy required to fix nitrogen. Since PEPC is important for nodules, and there is lack of information about the effect of some nutrient deficiency in the expression and localization of this enzyme in legume nodules, this work focused on the localization of PEPC in nodules under iron deficiency of two common bean cultivars: Flamingo tolerant and Coco blanc sensitive to iron (Fe) deficiency. The results of immunolocalization using polyclonal antibody showed that this enzyme was detected in all regions of nodule sections; but the signal intensity was increased in Fe-deficient nodules as compared to Fe-sufficient ones in the tolerant cultivar, whereas the intensity was less pronounced in nodules of Fe-deficient plants than in those of Fe-sufficient plants for the sensitive cultivar Coco blanc. This work showed that the symbiotic tolerance of Flamingo to iron deficiency was linked to the increase of PEPC enzymes expression. However, the activity of these enzymes supported the energy required in bacteroids to maintain the nitrogenase activity.Keywords: Common bean, immunolocalization, iron deficiency, nodules, phosphoenol pyruvate carboxylas

Plasticity, exudation and microbiome-association of the root system of Pellitory-of-the-wall plants grown in environments impaired in iron availability

The investigation of the adaptive strategies of wild plant species to extreme environments is a challenging issue, which favors the identification of new traits for plant resilience. We investigated different traits which characterize the root-soil interaction of Parietaria judaica, a wild plant species commonly known as "Pellitory-of-the-wall". P. judaica adopts the acidification-reduction strategy (Strategy I) for iron (Fe) acquisition from soil, and it can complete its life cycle in highly calcareous environments without any symptoms of chlorosis. In a field-to-lab approach, the microbiome associated with P. judaica roots was analyzed in spontaneous plants harvested from an urban environment consisting in an extremely calcareous habitat. Also, the phenolics and carboxylates content and root plasticity and exudation were analyzed in P. judaica plants grown under three different controlled conditions mimicking the effect of calcareous environments on Fe availability: results show that P. judaica differentially modulates root plasticity under different Fe availability-impaired conditions, and that it induces, to a high extent, the exudation of caffeoylquinic acid derivatives under calcareous conditions, positively impacting Fe solubility.13n

An international standardization programme towards the application of gene expression profiling in routine leukaemia diagnostics: the Microarray Innovations in LEukemia study prephase

Gene expression profiling has the potential to enhance current methods for the diagnosis of haematological malignancies. Here, we present data on 204 analyses from an international standardization programme that was conducted in 11 laboratories as a prephase to the Microarray Innovations in LEukemia (MILE) study. Each laboratory prepared two cell line samples, together with three replicate leukaemia patient lysates in two distinct stages: (i) a 5-d course of protocol training, and (ii) independent proficiency testing. Unsupervised, supervised, and r2 correlation analyses demonstrated that microarray analysis can be performed with remarkably high intra-laboratory reproducibility and with comparable quality and reliability

The role of immune suppression in COVID-19 hospitalization: clinical and epidemiological trends over three years of SARS-CoV-2 epidemic

Specific immune suppression types have been associated with a greater risk of severe COVID-19 disease and death. We analyzed data from patients >17 years that were hospitalized for COVID-19 at the “Fondazione IRCCS Ca′ Granda Ospedale Maggiore Policlinico” in Milan (Lombardy, Northern Italy). The study included 1727 SARS-CoV-2-positive patients (1,131 males, median age of 65 years) hospitalized between February 2020 and November 2022. Of these, 321 (18.6%, CI: 16.8–20.4%) had at least one condition defining immune suppression. Immune suppressed subjects were more likely to have other co-morbidities (80.4% vs. 69.8%, p < 0.001) and be vaccinated (37% vs. 12.7%, p < 0.001). We evaluated the contribution of immune suppression to hospitalization during the various stages of the epidemic and investigated whether immune suppression contributed to severe outcomes and death, also considering the vaccination status of the patients. The proportion of immune suppressed patients among all hospitalizations (initially stable at <20%) started to increase around December 2021, and remained high (30–50%). This change coincided with an increase in the proportions of older patients and patients with co-morbidities and with a decrease in the proportion of patients with severe outcomes. Vaccinated patients showed a lower proportion of severe outcomes; among non-vaccinated patients, severe outcomes were more common in immune suppressed individuals. Immune suppression was a significant predictor of severe outcomes, after adjusting for age, sex, co-morbidities, period of hospitalization, and vaccination status (OR: 1.64; 95% CI: 1.23–2.19), while vaccination was a protective factor (OR: 0.31; 95% IC: 0.20–0.47). However, after November 2021, differences in disease outcomes between vaccinated and non-vaccinated groups (for both immune suppressed and immune competent subjects) disappeared. Since December 2021, the spread of the less virulent Omicron variant and an overall higher level of induced and/or natural immunity likely contributed to the observed shift in hospitalized patient characteristics. Nonetheless, vaccination against SARS-CoV-2, likely in combination with naturally acquired immunity, effectively reduced severe outcomes in both immune competent (73.9% vs. 48.2%, p < 0.001) and immune suppressed (66.4% vs. 35.2%, p < 0.001) patients, confirming previous observations about the value of the vaccine in preventing serious disease

Growth Performance and Biochemical Composition of Waste-Isolated Microalgae Consortia Grown on Nano-Filtered Pig Slurry and Cheese Whey under Mixotrophic Conditions

The cultivation mode plays a vital role in algal growth and composition. This paper assessed the growth ability of twelve algae–microbial consortia (ACs) originally selected from organic wastes when nano-filtered pig slurry wastewater (NFP) and cheese whey (CW) were used as growth substrates in a mixotrophic mode in comparison with a photoautotrophic mode. Nutrient uptake ability, biochemical composition, fatty acids, and amino acid profiles of ACs were compared between both cultivation conditions. On average, 47% higher growth rates and 35% higher N uptake were found in mixotrophic cultivation along with significant P and TOC removal rates. Changing the cultivation mode did not affect AA and FA composition but improved EAA content, providing the potential for AC_5 and AC_4 to be used as local protein feed supplements. The results also showed the possibility for AC_6 and AC_1 to be used as omega-3 supplements due to their low ω-6–ω-3 ratio

Growth Performance, Biochemical Composition and Nutrient Recovery Ability of Twelve Microalgae Consortia Isolated from Various Local Organic Wastes Grown on Nano-Filtered Pig Slurry

This paper demonstrated the growth ability of twelve algae-microbial consortia (AC) isolated from organic wastes when a pig slurry-derived wastewater (NFP) was used as growth substrate in autotrophic cultivation. Nutrient recovery, biochemical composition, fatty acid and amino acid profiles of algae consortia were evaluated and compared. Three algae-microbial consortia, i.e., a Chlorella-dominated consortium (AC_1), a Tetradesmus and Synechocystis co-dominated consortium (AC_10), and a Chlorella and Tetradesmus co-dominated consortium (AC_12) were found to have the best growth rates (µ of 0.55 ± 0.04, 0.52 ± 0.06, and 0.58 ± 0.03 d−1, respectively), which made them good candidates for further applications. The ACs showed high carbohydrates and lipid contents but low contents of both proteins and essential amino acids, probably because of the low N concentration of NFP. AC_1 and AC_12 showed optimal ω6:ω3 ratios of 3.1 and 3.6, which make them interesting from a nutritional point of view

Biohazard identification: Profiling microalgal cultures growing on municipal wastewater and fertilizer medium in raceway photobioreactors

Microalgae provide a promising way to combine wastewater treatment and biomass production. They are often used as pre-treatment to reduce pathogenic loads: however, a full characterisation of the risks is still needed to develop safety guidelines. Two raceways were inoculated with Scenedesmus, one in a fertilizer medium and one in wastewater. Biohazards were then explored in three ways: NGS analysis, commercial qPCR array and plate counts. Media and sampling locations contributed to shape bacterial and eukaryotic structures and pathogenic loads. Communities were variable across time with a higher diversity between inlets than between biomass and outlets. A lower presence of pathogens was seen in fertilizer, while wastewater showed a distinct reduction from inlet to outlet. The main pathogenic genera detected were Arcobacter and Elizabethkingia with an important presence of Aeromonas. The three analyses together identified the necessity of preventive and protection measures and of post-harvest treatments

Effects of the application of microbiologically activated bio-based fertilizers derived from manures on tomato plants and their rhizospheric communities

Abstract Bio-based fertilizers (BBFs) recovered from animal manure are promising products to optimise resources recovery and generate high agricultural yields. However, their fertilization value may be limited and it is necessary to enrich BBFs with microbial consortia to enhance their fertilization value. Three specific microbial consortia were developed according to the characteristics of three different BBFs produced from manure (bio-dried solid fraction, solid fraction of digestate and biochar) to enhance plant growth and product quality. A greenhouse pot experiment was carried out with tomato plants grown with microbiologically activated BBFs applied either as N-organic fertilizers or as an organic amendment. A next generation sequencing analysis was used to characterise the development of each rhizospheric community. All the activated BBFs gave enhanced tomato yields (fresh and dry weight) compared with the non-activated treatments and similar to, or higher than, chemical fertilization. Concerning the tomato fruits’ organoleptic quality, lycopene and carotenoids concentrations were improved by biological activation. Metagenomic analysis points at Trichoderma as the main driver of the positive effects, with the effects of added bacteria being negligible or limited at the early stages after fertilization. In the context of the circular economy, the activated BBFs could be used to replace synthetic fertilisers, reducing costs and environmental burdens and increasing production

Evolution of Biogenic Nitrogen from Digestates for Lettuce Fertilization and the Effect on the Bacterial Community

Among the many inputs, nitrogen fertilizers are the main yield-limiting factor in agriculture. Liquid fractions of digestates can be a most promising substitute to synthetic nitrogen fertilizers, using little energy to turn waste into valuable fertilizers. In this study, the efficacy of five digestates from different origin (C, cow slurry; P, pig slurry; PCE, pig slurry, cow slurry, energy crops; SS, sewage sludge; W, organic fraction of municipal waste) were assessed as fertilizers for the cultivation of Lactuca sativa L., compared to traditional mineral fertilization. Digestates showed promising results as fertilizers for Lactuca sativa L., as yield and chemical parameters were overall comparable to the mineral fertilizer. Analysis of nitrogen evolution showed that most digestates showed higher nitrates in the substrates than the mineral fertilizers at earlier stages. Another topic investigated in the study is the effect of the digestates on the bacterial populations of the growth substrate, investigated through quantification and sequencing of 16S gene. These results varied based on the digestate considered, but, in general, an increase in biodiversity could be linked to use of digestates. These results suggest that digestates might become an alternative to mineral fertilizers, contributing to the circular economy and waste reduction