Abundance and distribution of California sea lions (Zalophus californianus) in central and northern California during 1998 and summer 1999

The abundance and distribution of California sea lions (Zalophus californianus) in central and northern California was studied to allow future evaluation of their impact on salmonids, the ecosystem, and f isheries. Abundance at-sea was estimated by using the strip transect method from a fixed-wing aircraft with a belly viewing port. Abundance on land was estimated from 126-mm-format aerial photographs of animals at haulouts between Point Conception and the California−Oregon border. The sum of these two estimates represented total abundance for central and northern California. Both types of survey were conducted in May−June 1998, September 1998, December 1998, and July 1999. A haulout survey was conducted in July 1998. The greatest number of sea lions occurred near Monterey Bay and San Francisco Bay for all surveys. Abundance was high in central and northern California in 1998 when warm water from the 1997−98 El Niño affected the region and was low in July 1999 when cold water La Niña conditions were prevalent. At-sea abundance estimates in central and northern California ranged from 12,232 to 40,161 animals, and haulout abundance was 13,559 to 36,576 animals. Total abundance of California sea lions in central and northern California was estimated as 64,916 in May−June 1998, 75,673 in September 1998, 56,775 in December 1998, and 25,791 in July 1999. The proportion of total abundance to animals hauled-out for the four complete surveys ranged from 1.77 to 2.13, and the mean of 1.89 was used to estimate a total abundance of 49,697 for July 1998. This multiplier may be applicable in the future to estimate total abundance of California sea lions off central and northern California if only the abundance of animals at haulout sites is known

Restricted maximum likelihood estimation of genetic principal components and smoothed covariance matrices

Principal component analysis is a widely used 'dimension reduction' technique, albeit generally at a phenotypic level. It is shown that we can estimate genetic principal components directly through a simple reparameterisation of the usual linear, mixed model. This is applicable to any analysis fitting multiple, correlated genetic effects, whether effects for individual traits or sets of random regression coefficients to model trajectories. Depending on the magnitude of genetic correlation, a subset of the principal component generally suffices to capture the bulk of genetic variation. Corresponding estimates of genetic covariance matrices are more parsimonious, have reduced rank and are smoothed, with the number of parameters required to model the dispersion structure reduced from k(k + 1)/2 to m(2k - m + 1)/2 for k effects and m principal components. Estimation of these parameters, the largest eigenvalues and pertaining eigenvectors of the genetic covariance matrix, via restricted maximum likelihood using derivatives of the likelihood, is described. It is shown that reduced rank estimation can reduce computational requirements of multivariate analyses substantially. An application to the analysis of eight traits recorded via live ultrasound scanning of beef cattle is given

Sustainability of Worker Co-Operatives

With the world of business often criticised for contributing to social and environmental damage, addressing sustainability has become necessary for virtually all business models, including co-operatives. This article investigates ways in which worker co-operatives can contribute to a more sustainable world, using the conceptual lens of Doughnut Economics (DE). It places enterprises, as a supporting pillar of our economies, at the intersection between meeting social needs and operating within planetary boundaries. A descriptive multiple case study of six worker co-operatives in the UK indicates that these enterprises contribute to sustainability primarily by embodying a mission of fulfilling the needs of workers and their communities, rather than just aiming for financial gains. Worker co-operatives are enterprises with highly generative design traits, distributive of the wealth they generate, and to some degree regenerative by design. Their strengths lie in learning capacity and distributive values that contribute to social sustainability. The implications of the study are demonstrated in the use of the DE model for addressing sustainability in the studied worker co-operatives. This article contributes to the body of knowledge on sustainability in worker co-operatives as a relatively less researched form of co-operative organisation, employing DE as a holistic framework which so far has been seldom used in business research

Identifying the interrelations between subjective walkability factors and walking behaviour:A case study in Jeddah, Saudi Arabia

Promoting pedestrian-friendly environments has become a subject of great interest worldwide, as it crosses a wide range of scientific fields. Numerous factors have been proposed to measure the level of walkability, but no consensus has been reached on the factors to consider when measuring walkability and the effects of these factors on walking behaviour. Thus, this study aimed to identify objective and subjective walkability factors and their relation to current walking behaviour. The findings were expected to contribute to the design and planning of walkable cities and neighbourhoods. The study designed a theoretical framework stemming from social psychology and urban transport geography to elucidate the influence of walkability factors on walking behaviour. Based on this framework, a survey was conducted among 556 participants. Results of the multivariate correlation analyses and binary logistic regression revealed views that differed from those reported in the literature for other contexts. The comparative analysis based on individuals’ characteristics and travel purposes did not detect any strong variation in walking behaviour. Other results were consistent with previous findings on issues of the hierarchy of walking needs. People’s decision to walk in the selected region was not necessarily determined only by the current condition of the physical built environment. Among all the factors studied, factors concerning accessibility, safety in terms of traffic, and comfort were found to be important for determining walking behaviour. Future studies should enhance walkability measurements by examining the interrelations between subjective walkability factors and the physical built environment

Gene doctoring: a method for recombineering in laboratory and pathogenic Escherichia coli strains

Background: Homologous recombination mediated by the lambda-Red genes is a common method for making chromosomal modifications in Escherichia coli. Several protocols have been developed that differ in the mechanisms by which DNA, carrying regions homologous to the chromosome, are delivered into the cell. A common technique is to electroporate linear DNA fragments into cells. Alternatively, DNA fragments are generated in vivo by digestion of a donor plasmid with a nuclease that does not cleave the host genome. In both cases the lambda-Red gene products recombine homologous regions carried on the linear DNA fragments with the chromosome. We have successfully used both techniques to generate chromosomal mutations in E. coli K-12 strains. However, we have had limited success with these lambda-Red based recombination techniques in pathogenic E. coli strains, which has led us to develop an enhanced protocol for recombineering in such strains. \ud \ud Results: Our goal was to develop a high-throughput recombineering system, primarily for the coupling of genes to epitope tags, which could also be used for deletion of genes in both pathogenic and K-12 E. coli strains. To that end we have designed a series of donor plasmids for use with the lambda-Red recombination system, which when cleaved in vivo by the I-SceI meganuclease generate a discrete linear DNA fragment, allowing for C-terminal tagging of chromosomal genes with a 6xHis, 3xFLAG, 4xProteinA or GFP tag or for the deletion of chromosomal regions. We have enhanced existing protocols and technologies by inclusion of a cassette conferring kanamycin resistance and, crucially, by including the sacB gene on the donor plasmid, so that all but true recombinants are counter-selected on kanamycin and sucrose containing media, thus eliminating the need for extensive screening. This method has the added advantage of limiting the exposure of cells to the potential damaging effects of the lambda-Red system, which can lead to unwanted secondary alterations to the chromosome. \ud \ud Conclusion: We have developed a counter-selective recombineering technique for epitope tagging or for deleting genes in E. coli. We have demonstrated the versatility of the technique by modifying the chromosome of the enterohaemorrhagic O157:H7 (EHEC), uropathogenic CFT073 (UPEC), enteroaggregative O42 (EAEC) and enterotoxigenic H10407 (ETEC) E. coli strains as well as in K-12 laboratory strains

Soils of Great Salt Lake Wetlands: Hydric Indicators and Common Features

Using information in this booklet, the physical features of a wetland soil can be observed to tell a story about a soil’s history, its characteristics, the wetland in which it is found, and the plant life it supports. Hydric soils have unique characteristics, due to anaerobic conditions, that distinguish them from other soil types. Great Salt Lake wetland soils display many of these hydric characteristics. The many functions that Great Salt Lake wetland soils provide, from transforming nutrients, to filtering toxins and accumulating loose sediments, make them an important resource worth protecting. The diversity of soil types and soil features in this re-gion both support and reflect the dynamic diversity of plants and animals that visitors admire

Extraction of Acids and Bases from Aqueous Phase to a Pseudoprotic Ionic Liquid

We report experiments on the extraction of acids and bases from an aqueous phase to a pseudoprotic ionic liquid phase consisting of an equimolar mixture of trihexylamine and octanoic acid. We observed the extraction of a wide range of acids and bases, and investigated the mechanism of extraction in detail. Our results confirmed the observation of the Hofmeister effect in these systems reported in our previous work, where the extent of the extraction of copper salts was significantly influenced by the interactions between extracted inorganic anions and the organic phase. Our results further demonstrated that the organic layer served as a “floating buffer” capable of stabilizing the pH of an acidic or alkaline aqueous phase. The results tie current interest in protic and pseudoprotic ionic liquids to earlier work on the extraction of acids using amine and acid–base couples as extraction agents in an inert organic solvent

Phylogeography of the crown-of-thorns starfish in the Indian Ocean

Background: Understanding the limits and population dynamics of closely related sibling species in the marine realm is particularly relevant in organisms that require management. The crown-of-thorns starfish Acanthaster planci, recently shown to be a species complex of at least four closely related species, is a coral predator infamous for its outbreaks that have devastated reefs throughout much of its Indo-Pacific distribution. Methodology/Principal Findings: In this first Indian Ocean-wide genetic study of a marine organism we investigated the genetic structure and inferred the paleohistory of the two Indian Ocean sister-species of Acanthaster planci using mitochondrial DNA sequence analyses. We suggest that the first of two main diversification events led to the formation of a Southern and Northern Indian Ocean sister-species in the late Pliocene-early Pleistocene. The second led to the formation of two internal clades within each species around the onset of the last interglacial. The subsequent demographic history of the two lineages strongly differed, the Southern Indian Ocean sister-species showing a signature of recent population expansion and hardly any regional structure, whereas the Northern Indian Ocean sister-species apparently maintained a constant size with highly differentiated regional groupings that were asymmetrically connected by gene flow. Conclusions/Significance: Past and present surface circulation patterns in conjunction with ocean primary productivity were identified as the processes most likely to have shaped the genetic structure between and within the two Indian Ocean lineages. This knowledge will help to understand the biological or ecological differences of the two sibling species and therefore aid in developing strategies to manage population outbreaks of this coral predator in the Indian Ocean