13 research outputs found

    Scores of FYN centrality indexes in Xk_to_P-tyr- and chorein_to_P-tyr- networks.

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    <p>(<b>A</b>) Eccentricity, closeness, radiality, betweenness, degree, stress and centroid centrality indexes of the src-related, protein tyrosine kinase FYN in the chorea-acanthocytosis (ChAc; chorein_to_P-tyr)-related sub-network. (<b>B</b>) Eccentricity, closeness, radiality, betweenness, degree, stress and centroid centrality indexes of the src-related, protein tyrosine kinase FYN in McLeod syndrome (MLS; Xk_to_P-tyr)-related sub-network. The score of every index was normalized to the maximal value for every index, considered as 100%. Red columns are relative values for FYN. Blue columns are average values. White columns are maximal values. Green columns are minimal values.</p

    Centrality discretization in Xk_VPS13A-intersected network.

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    <p>(<b>A</b>) Plot of centroid vs. centroid centrality index values of all nodes in the Xk_ chorein-intersected network. (<b>B</b>) Plot of centroid vs. betweenness centrality index values of all nodes in the Xk_chorein-intersected network; the plot shows a concurrent discretization of centroid and betweenness, highlighting a cluster of 41 proteins having centroid and betweenness above the network average.</p

    Results of the baseline between group (SCA2 vs. controls) TBM analysis.

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    <p>Voxel-wise corrected p-value maps (threshold-free cluster enhancement, TFCE), testing the null hypothesis of zero differences in <b>|J|</b><sub>baseline</sub> between SCA2 patients and healthy controls. Highlighted clusters indicate significantly (p<0.05) more pronounced mean atrophy in SCA2 patients when compared to healthy controls (i.e. <b>|J|</b><sub>baseline</sub> in SCA2 patients significantly lower than <b>|J|</b><sub>baseline</sub> in healthy controls). All maps are overlayed on population-specific T1 template. These maps show significant symmetric atrophic changes in SCA2 patients (with respect to controls) in the brainstem, middle cerebellar peduncels, and cerebellar WM and adjacent cortical GM. No significant differences are observed in the supratentorial compartment.</p

    Sub-network of proteins in the Xk_ chorein-intersected network.

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    <p>Sub-network of proteins in the Xk_chorein-intersected network having centroid and betweenness over the network average. The sub-network contains 41 proteins connected by 818 interactions. All proteins are kinases.</p

    DUSP13 shortest paths to dephosphorylated proteins in Xk_to_P-tyr-network.

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    <p>Graph of all shortest paths linking DUSP13 to INMT, PRPH, PRDX6 and ANXA4. A distance of 3 (ANXA4) or 4 (INMT, PRPH, PRDX6) degree separates DUSP13 from the proteins found dephosphorylated in red cell from patients with McLeod syndrome (MLS).</p
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