A Liquid Crystal Model of Viral DNA Encapsidation

A liquid crystal continuum modeling framework for icosahedra bacteriophage viruses is developed and tested. The main assumptions of the model are the chromonic columnar hexagonal structure of confined DNA, the high resistance to bending and the phase transition from solid to fluid-like states as the concentration of DNA in the capsid decreases during infection. The model predicts osmotic pressure inside the capsid and the ejection force of the DNA as well as the size of the isotropic volume at the center of the capsid. Extensions of the model are discussed

Telephone-cord instabilities in thin smectic capillaries

Telephone-cord patterns have been recently observed in smectic liquid crystal capillaries. In this paper we analyse the effects that may induce them. As long as the capillary keeps its linear shape, we show that a nonzero chiral cholesteric pitch favors the SmA*-SmC* transition. However, neither the cholesteric pitch nor the presence of an intrinsic bending stress are able to give rise to a curved capillary shape. The key ingredient for the telephone-cord instability is spontaneous polarization. The free energy minimizer of a spontaneously polarized SmA* is attained on a planar capillary, characterized by a nonzero curvature. More interestingly, in the SmC* phase the combined effect of the molecular tilt and the spontaneous polarization pushes towards a helicoidal capillary shape, with nonzero curvature and torsion.Comment: Submitte

Three-dimensional soliton-like distortions in flexoelectric nematic liquid crystals: modeling and linear analysis

This article models experimentally observed three dimensional particle-like waves that develop in nematic liquid crystals, with negative dielectric and conductive anisotropy, when subject to an applied alternating electric field. The liquid crystal is confined in a thin region between two plates, perpendicular to the applied field. The horizontal, uniformly aligned director field is at equilibrium due to the negative anisotropy of the media. However, such a state is unstable to perturbations that manifest themselves as confined, bullet-like, director distortions traveling up and down the sample at a speed of several hundred microns per second. It is experimentally predicted that flexoelectricity plays a key role in generating the soliton-like behavior. We develop a variational model that accounts for ansiostropic dielectric, conductive, flexolectric, elastic and viscous forces. We perform a stability analysis of the uniformly aligned equilibrium state to determine the threshold wave numbers, size, phase-shift and speed of the soliton-like disturbance. We show that the model predictions are in very good agreement with the experimentally measured values. The work models and analyzes a three-dimensional soliton-like instability reported, for the first time in flexoelectric liquid crystals, pointing towards a potential application as a new type of nanotransport device.Comment: 26 pages, 2 figure