Sequencing output for bovine reference sequence, 2006 US atypical BSE case, and 2-year-old heifer offspring.

<p>The bovine reference sequence is homozygous for G at nucleotide 631. The 2006 US atypical BSE case and the 2-year-old heifer offspring are heterozygous G/A at nucleotide 631.</p

Summary of differentially expressed genes in PAMs infected with PRRSV.

<p>All genes (A), up-regulated genes (B) and down-regulated genes at four time-points post-infection (C).</p

Fold change in TPM for genes with multiple tags due to nucleotide polymorphisms.

<p>TPM and fold changes for two tags in <i>PLIN2</i> (A), <i>RPS13</i> (B) and <i>SLA-DRA</i> (C) genes representing different alleles at 0, 6, 12, 16 and 24 hours post-infection.</p

Pathway summary of DE genes that are related to six biological systems of PAMs infected with PRRSV.

<p>Pathway summary of DE genes that are related to six biological systems of PAMs infected with PRRSV.</p

Ten expression trend clusters of 699 DE genes derived from PAMs during PRRSV infection.

<p>Ten expression trend clusters of 699 DE genes derived from PAMs during PRRSV infection.</p

DE gene distributions and interactions among functional categories associated with Human Diseases in PAMs infected with PRRSV.

<p>DE gene distributions and interactions among functional categories associated with Human Diseases in PAMs infected with PRRSV.</p

DE gene distributions and interactions among functional categories associated with Environmental Information Processing in PAMs infected with PRRSV.

<p>DE gene distributions and interactions among functional categories associated with Environmental Information Processing in PAMs infected with PRRSV.</p

Fold change in TPM for genes with multiple tags due to mRNA isoforms.

<p>TPM and fold changes for two tags in <i>ARG1</i> (A), <i>SLA-DQA1</i> (B), <i>TIMP2</i> (C) and <i>TOB1</i> (D) representing different mRNA isoforms at 0, 6, 12, 16 and 24 hours post-infection.</p

Identification and characterization of tags/genes differentially expressed between the 0 hour mock-infected and the 6, 12, 16 and 24 hours PRRSV-infected PAM cells.

<p>Identification and characterization of tags/genes differentially expressed between the 0 hour mock-infected and the 6, 12, 16 and 24 hours PRRSV-infected PAM cells.</p