Using metagenomics to investigate the impact of hospital stay and the ARK intervention on the human gut resistome

Antimicrobials are vital for modern medicine. Antimicrobial use selects for antimicrobial resistant bacteria, particularly among the gut microflora. Minimising antimicrobial resistance (AMR) selection by avoiding unnecessary antibiotic use helps combat AMR. Metagenomic analyses have the potential to provide accurate detection and quantification of AMR genes within an individual’s gut microbiome (gut ‘resistome’), allowing the impact of different types of antibiotic exposures to be evaluated and guide interventions to reduce AMR. We have developed a short-read sequencing approach to characterise the gut ‘resistome’ and piloted this in two clinical sample sets. The first consisted of paired stool samples from older hospitalised adults. 25 pairs of samples (1 to 50 days apart) showed a median AMR gene reads/kb/million total reads (RPKM) of 1841 (124 to 17,832), and a median AMR gene count of 55 (2 to 101). The second consisted of faecal discards from Clostridium difficile testing at a hospital eleven months apart. In these samples (n=21) the median AMR gene read was 923 RPKM (240 to 19,475), and the median AMR gene count was 36 (9 to 82). In both sample sets there was a trend towards an increase in AMR gene RPKM and number between the time points. dfrF, tetW and acrA were the commonest AMR genes in the first sample set, while ErmB, dfrF, CblA_1 and AHP_3 IIIa were the commonest in the second sample set. This approach is being applied to analyse the impact of an intervention (ARK-Hospital) designed to change antibiotic prescribing behaviour. The data will allow us to determine the patient-level impact of reduced antibiotic exposure on carried AMR

Day–night pattern of energy expenditure and body temperature in cachectic tumour-bearing rats

The implication of an increase in energy expenditure in cancer cachexia, which seems to be related to the type of tumour, remains unclear. We therefore investigated the energy metabolism and body temperature in anorectic and cachectic rats bearing the Yoshida sarcoma (TB), in comparison with pair-fed (PF) and ad-libitum fed (AL) control rats. The resting energy expenditure was higher in the TB than in the two control groups when corrected for the modifications of body composition. However, the total energy expenditure did not differ between the TB and the AL, presumably because of the drop of activity in TB. There was a temporal distribution of differences in energy expenditure with higher energy expenditure in TB than in AL during the diurnal phase and a lack of difference during the nocturnal phase. The TB presented a fever, which was limited to the diurnal period. Moreover, the acrophase of the body temperature rhythm was delayed in the TB. These results highlight the circadian effects of tumour development on the energy metabolism of the host and hint to the possible implication of cytokines. © 2000 Harcourt Publishers Ltd © 2000 Cancer Research Campaig

Singular values of some modular functions

We study the properties of special values of the modular functions obtained from Weierstrass P-function at imaginary quadratic points.Comment: 19 pages,corrected typo

A novel role in cytokinesis reveals a housekeeping function for the unfolded protein response

The unfolded protein response (UPR) pathway helps cells cope with endoplasmic reticulum (ER) stress by activating genes that increase the ER's functional capabilities. We have identified a novel role for the UPR pathway in facilitating budding yeast cytokinesis. Although other cell cycle events are unaffected by conditions that disrupt ER function, cytokinesis is sensitive to these conditions. Moreover, efficient cytokinesis requires the UPR pathway even during unstressed growth conditions. UPR-deficient cells are defective in cytokinesis, and cytokinesis mutants activate the UPR. The UPR likely achieves its role in cytokinesis by sensing small changes in ER load and making according changes in ER capacity. We propose that cytokinesis is one of many cellular events that require a subtle increase in ER function and that the UPR pathway has a previously uncharacterized housekeeping role in maintaining ER plasticity during normal cell growth

Effects of Individual Pre-Fledging Traits and Environmental Conditions on Return Patterns in Juvenile King Penguins

Despite the importance of early life stages in individuals' life history and population dynamics, very few studies have focused on the constraints to which these juvenile traits are subjected. Based on 10 years of automatic monitoring of over 2500 individuals, we present the first study on the effects of environmental conditions and individual pre-fledging traits on the post-fledging return of non-banded king penguins to their natal colony. Juvenile king penguins returned exclusively within one of the three austral summers following their departure. A key finding is that return rates (range 68–87%) were much higher than previously assumed for this species, importantly meaning that juvenile survival is very close to that of adults. Such high figures suggest little juvenile dispersal, and selection occurring mostly prior to fledging in king penguins. Pre-fledging conditions had a strong quadratic impact on juvenile return rates. As expected, cohorts reared under very unfavourable years (as inferred by the breeding success of the colony) exhibited low return rates but surprisingly, so did those fledged under very favourable conditions. Juvenile sojourns away from the colony were shorter under warm conditions and subsequent return rates higher, suggesting a positive effect of climate warming. The longer the post-fledging trip (1, 2 or 3 years), the earlier in the summer birds returned to their natal colony and the longer they stayed before leaving for the winter journey. The presence of juveniles in the colony was more than twice the duration required for moulting purposes, yet none attempted breeding in the year of their first return. Juvenile presence in the colony may be important for acquiring knowledge on the social and physical colonial environment and may play an important part in the learning process of mating behaviour. Further studies are required to investigate its potential implications on other life-history traits such as recruitment age

Effets du dérangement par la chasse sur les oiseaux d'eau : revue de littérature

La chasse aux oiseaux d'eau, activité humaine largement pratiquée sur les zones humides du continent eurasiatique, présente deux composantes pouvant affecter la dynamique des populations de ces espèces migratrices : le prélèvement (qui concerne la mortalité) et le dérangement. Ce dernier aspect fait l'objet d'études de plus en plus nombreuses et détaillées, ici synthétisées, incluant des protocoles expérimentaux et des approches conceptuelles. Le dérangement par la chasse est considéré comme important pour une espèce lorsque les modifications qu'il induit ont un effet sur la « fitness » des individus de cette espèce (diminution de la survie et/ou du succès reproducteur). Les études montrent que le dérangement modifie presque toujours la distribution géographique des oiseaux en favorisant leur regroupement (5 à 50 fois plus) sur des espaces non chassés, induisant une sous-exploitation des ressources trophiques présentes sur les espaces chassés. Le dérangement peut aussi provoquer un accroissement du taux de renouvellement (« turnover ») des individus sur leur étape migratoire. Ces transferts d'oiseaux, bien quantifiés localement, ont un impact encore inconnu sur la taille des populations concernées, la large distribution de ces populations sur plusieurs continents rendant cette évaluation difficile. Le dérangement provoque une modification comportementale soit en favorisant des activités plus coûteuses que celles pratiquées sans dérangement, soit en diminuant le temps passé à des activités qui permettent d'acquérir de l'énergie. Les estimations ou simulations de ces pertes peuvent atteindre 25 % de la dépense énergétique journalière. Les oiseaux dérangés développent des capacités d'adaptation physiologique face aux contraintes associées au dérangement, par exemple une augmentation de la prise alimentaire, une augmentation du rendement de l'assimilation énergétique ou une augmentation de la sécrétion de corticostérone qui stimule l'activité de recherche de nourriture. L'évaluation directe du bilan énergétique de ces adaptations n'a pas encore été réalisée et l'on peut admettre qu'elles permettent à l'oiseau de maintenir un apport énergétique analogue à celui obtenu sans dérangement; mais le coût à terme de cette acquisition est élevé. Ainsi, une étude récente sur la Grande Oie des neiges Anser caerules-cens atlantica au Canada révèle que lorsque les individus sont dérangés par la chasse sur leur étape migratoire de printemps, ils sont contraints d'exploiter des sites moins riches que s'il n'y avait pas de chasse; ils sont alors dans de moins bonnes conditions corporelles (lipidiques et protéiniques) lors du départ vers leurs lieux de reproduction et ils ont finalement un moindre succès de reproduction que les individus n'ayant pas subi le dérangement par la chasse. Certes, des lacunes et des incertitudes persistent, par exemple au niveau spécifique (peu d'études sur les limicoles), mais tous les auteurs qui les ont mises en évidence s'accordent aussi pour reconnaître que, pour contrebalancer les effets du dérangement par la chasse, des mesures de protection doivent être prises.Waterbird hunting is a widespread human activity over wetlands of the Eurasian continent. It has two components that can influence the population dynamics of migratory species : mortality and disturbance. Disturbance is the focus of an increasing number of detailed studies, using both experimental and theoretical approaches. They are synthesized herein. Disturbance is considered important when induced changes influence the fitness of the individuals of a species (decrease in survival or breeding success). Studies show that disturbance almost always change the geographical distribution of birds, conducting to an under-exploitation of food resources available in hunting areas. Disturbance can also favour an increase in the turnover rate of individuals on their migratory stopover. These changes in bird distribution, although precisely quantified at a local scale, have an unknown impact on the population size of the concerned species. The wide distribution of several of these species ranging over several continents makes the precise evaluation of this impact difficult. Disturbance changes behaviour either by increasing time spent in activities more costly than those done without disturbance or by decreasing time spent gaining energy. Estimation or simulation of these lost can reach 25% of the daily energy expenses. Facing disturbance, birds can develop several physiological adaptations, for instance an increased food intake, an increased efficiency of energy assimilation or an augmentation of corticosterone secretion stimulating food searching. The direct evaluation of the energy balance of these adaptations has not been made yet and it can be acknowledged that they allow birds to maintain energy gains similar to those obtained without disturbance. However, the long-term cost of this compensation is high. A recent study of the Greater Snow Goose Anser caerulescens atlantica on their spring stopover in Canada indicates that hunting disturbance makes geese use lower quality habitats, decreases their body condition (fat and protein) when they depart to the breeding sites and decreases their breeding success relative to individuals that have not experienced hunting. Uncertainties remain, for instance at the species level (few studies on waders), but all authors that emphasized them also agree to acknowledge that protection measures must be taken to counter-balance the effects of hunting disturbance. They recommend the increase of protected areas (hunt-free areas), the elaboration of a network of reserves and the establishment of non hunted zones around existing reserves to reduce to the minimum the negative effects of disturbance on birds that use these reserves. The implementation of these management actions must favour the widening of the distribution of these populations and facilitate the local and regional increase of their numbers. These protection measures are positive responses to the recommendations of the European Union birds and habitats directives

Tantalum oxide/carbon nanotubes composite coatings on titanium, and their functionalization with organophosphonic molecular films:A high quality scaffold for hydroxyapatite growth

peer reviewedNowadays, titanium is a very commonly used biomaterial for the preparation of orthopedic and dental implants. Its excellent mechanical and biochemical bulk properties are nevertheless counterbalanced by its propensity to long term degradation in physiological conditions and its weak osseointegrative capacities. In this context, surface modifications can significantly hinder titanium weaknesses. The approach considered in this work relies on the preparation of thin composite coatings based on tantalum oxide and carbon nanotubes by sol–gel process. Tantalum is particularly interesting for its high biocompatibility and bioactivity, as well as its strong resistance to bio-corrosion. Carbon nanotubes are exploited to reinforce the compactness and homogeneity of the coatings, and can act as a favorable factor to strengthen the interaction with bone components by biomimicry. The composite layers are further modified with specific organophosphonic acid molecular films, able to chemically bind the tantalum oxide surface and improve the hydroxyapatite formation process. The characteristics and the qualities of these hybrid inorganic/organic coatings are evaluated by XPS, SEM, TEM, peeling tests, contact angle measurements, and electrochemical characterizations (free potential, polarization curves)