Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease

The oral microbiome, the complex ecosystem of microbes inhabiting the human mouth, harbors several thousands of bacterial types. The proliferation of pathogenic bacteria within the mouth gives rise to periodontitis, an inflammatory disease known to also constitute a risk factor for cardiovascular disease. While much is known about individual species associated with pathogenesis, the system-level mechanisms underlying the transition from health to disease are still poorly understood. Through the sequencing of the 16S rRNA gene and of whole community DNA we provide a glimpse at the global genetic, metabolic, and ecological changes associated with periodontitis in 15 subgingival plaque samples, four from each of two periodontitis patients, and the remaining samples from three healthy individuals. We also demonstrate the power of whole-metagenome sequencing approaches in characterizing the genomes of key players in the oral microbiome, including an unculturable TM7 organism. We reveal the disease microbiome to be enriched in virulence factors, and adapted to a parasitic lifestyle that takes advantage of the disrupted host homeostasis. Furthermore, diseased samples share a common structure that was not found in completely healthy samples, suggesting that the disease state may occupy a narrow region within the space of possible configurations of the oral microbiome. Our pilot study demonstrates the power of high-throughput sequencing as a tool for understanding the role of the oral microbiome in periodontal disease. Despite a modest level of sequencing (∼2 lanes Illumina 76 bp PE) and high human DNA contamination (up to ∼90%) we were able to partially reconstruct several oral microbes and to preliminarily characterize some systems-level differences between the healthy and diseased oral microbiomes

Control of ovulation with a GnRH agonist after superstimulation of follicular growth in buffalo: fertilization and embryo recovery

The potential to use a GnRH agonist bioimplant and injection of exogenous LH to control the time of ovulation in a multiple ovulation and embryo transfer (MOET) protocol was examined in buffalo. Mixed-parity buffalo (Bubalus bubalis; 4-15-year-old; 529 13 kg LW) were randomly assigned to one of five groups (n = 6): Group 1, conventional MOET protocol; Group 2, conventional MOET with 12 It delay in injection of PGF(2alpha); Group 3, implanted with GnRH agonist to block the pre-ovulatory surge release of LH; Group 4, implanted with GnRH agonist and injected with exogenous LH (Lutropin(R), 25 mg) 24 h after 4 days of superstimulation with FSH; Group 5, implanted with GnRH agonist and injected with LH 36 h after superstimulation with FSH. Ovarian follicular growth in all buffaloes was stimulated by treatment with FSH (Folltropin-V(R), 200 mg) administered over 4 days, and was monitored by ovarian ultrasonography. At the time of estrus, the number of follicles greater than or equal to8 mm. was greater (P < 0.05) for buffaloes in Group 2 (12.8) than for buffaloes in Groups 1 (8.5), 3 (7.3), 4 (6.1) and 5 (6.8), which did not differ. All buffaloes were mated by AI after spontaneous (Groups 1-3) or induced (Groups 4 and 5) ovulation. The respective number of buffalo that ovulated, number of corpora lutea, ovulation rate (%), and embryos + oocytes recovered were: Group 1 (2, 1.8 +/- 1.6, 18.0 +/- 13.6, 0.2 +/- 0.2); Group 2 (4, 6.1 +/- 2.9, 40.5 +/- 17.5, 3.7 +/- 2.1); Group 3 (0, 0, 0, 0); Group 4 (6, 4.3 +/- 1.2, 69.3 +/- 14.2, 2.0 +/- 0.9); and Group 5 (1, 2.5 +/- 2.5, 15.5 +/- 15.5, 2.1 +/- 2.1). All buffaloes in Group 4 ovulated after injection of LH and had a relatively high ovulation rate (69%) and embryo recovery (46%). It has been shown that the GnRH agonist-LH protocol can be used to improve the efficiency of MOET in buffalo. (C) 2002 Elsevier Science Inc. All rights reserved

High-pressure phase diagram of the drug mitotane in compressed and/or supercritical CO2

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)This work provides experimental phase diagram of mitotane, a drug used in the chemotherapy treatment of adrenocortical carcinoma, in compressed and/or supercritical CO2. The synthetic-static method in a high-pressure variable-volume view cell coupled with a transmitted-light intensity probe was used to measure the solid-fluid (SF) equilibrium data. The phase equilibrium experiments were determined in temperature ranging from (298.2 to 333.1) K and pressure up to 22 MPa. Peng-Robinson equation of state (PR-EoS) with classical mixing rule was used to correlate the experimental data. Excellent agreement was found between experimental and calculated values. (C) 2009 Elsevier Ltd. All rights reserved.422286290Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES

Geochemical evidence for melting of carbonated peridotite on Santa Maria Island, Azores

The islands of the Azores archipelago emerge from an oceanic plateau built on lithosphere increasing in age with distance from the Mid-Atlantic Ridge from 10 to 45 Ma. Here, we present the first comprehensive major and trace element and Sr-Nd-Pb isotope data from Santa Maria, the easternmost island of the archipelago, along with published data from the other Azores islands situated much closer to the Mid-Atlantic Ridge axis. We can show that the distinctively more variable and more enriched trace element ratios at Santa Maria combined with a relatively small range in Sr-Nd-Pb isotope ratios are the result of low degrees of partial melting of a common Azores mantle plume source underneath thicker lithosphere. This implies that melt extraction processes and melting dynamics may be able to better preserve the trace element mantle source variability underneath thicker lithosphere. These conclusions may apply widely for oceanic melts erupted on relatively thick lithosphere. In addition, lower Ti/Sm and K/La ratios and SiO2 contents of Santa Maria lavas imply melting of a carbonated peridotite source. Mixing of variable portions of deep small-degree carbonated peridotite melts and shallow volatile-free garnet peridotite could explain the geochemical variability underneath Santa Maria in agreement with the volatile-rich nature of the Azores mantle source. However, Santa Maria is the Azores island where the CO2-rich nature of the mantle source is more evident, reflecting a combination of a smaller extent of partial melting and the positioning at the edge of the tilted Azores mantle plume. © 2012 Springer-Verlag Berlin Heidelberg.0SCOPUS: ar.jSCOPUS: ar.jinfo:eu-repo/semantics/publishe

Participation caught in-between projects and policies?

Over the recent decades, we have experienced a shift away from technocratic planning towards the idea of place-based mediation, and the role of society in making the city. Initiating new readings the role participation and collaboration has on: (a) consensus building between capacity of participants, (b) the encouraging of broad range of contexts to shape evidence-based decision-making, including sociocultural, economic, and technological contexts, and (c) new forms of partnerships and funding between academic, municipalities, and companies. This has lead to contemporary planning practice and theory embracing the idea of reimagining and redefining, complexities and contexts that shape the city. By carrying out a literature review, the discussion of new instruments, strategies and formats, and theories that are currently being employed is expanded on. The author questions if this has lead to an urbanism approach where the strategic and spatial, formal, and informal frameworks of participatory practices appear to coexist