Inverse meta-modelling to estimate soil available water capacity at high spatial resolution across a farm

Geo-referenced information on crop production that is both spatially- and temporally-dense would be useful for management in precision agriculture (PA). Crop yield monitors provide spatially but not temporally dense information. Crop growth simulation modelling can provide temporal density, but traditionally fail on the spatial issue. The research described was motivated by the challenge of satisfying both the spatial and temporal data needs of PA. The methods presented depart from current crop modelling within PA by introducing meta-modelling in combination with inverse modelling to estimate site-specific soil properties. The soil properties are used to predict spatially- and temporally-dense crop yields. An inverse meta-model was derived from the agricultural production simulator (APSIM) using neural networks to estimate soil available water capacity (AWC) from available yield data. Maps of AWC with a resolution of 10 m were produced across a dryland grain farm in Australia. For certain years and fields, the estimates were useful for yield prediction with APSIM and multiple regression, whereas for others the results were disappointing. The estimates contain ‘implicit information’ about climate interactions with soil, crop and landscape that needs to be identified. Improvement of the meta-model with more AWC scenarios, more years of yield data, inclusion of additional variables and accounting for uncertainty are discussed. We concluded that it is worthwhile to pursue this approach as an efficient way of extracting soil physical information that exists within crop yield maps to create spatially- and temporally-dense dataset

Competitive Abilities of Oat and Barley Varieties

Competitive ability of a plant genotype reflects its capacity to yield well and compete successfully for light, moisture, and nutrients when grown with similar or dissimilar genotypes. This trait is important to plant breeding because most breeding populations are propagated in mixed or competitive stands. The objective of this study was to assess the competitive abilities of oat and barley genotypes. Two sets of oat and barley genotypes were evaluated for competitive ability. Set I consisted of five oat varieties, and Set II consisted of two barley and three oat varieties. Neither set, when averaged, showed over- or under-compensation with respect to competitive ability. Genotypes within a set were highly variable fur mean competitive ability, and the effects of competition were even more variable for individual pairs. In the set with barley and oats, a competitive advantage or disadvantage shown by an entity tended to be consistent across competitors. Competitive advantages or disadvantages displayed by oat and barley genotypes for biomass and grain yield usually could be related to components of biomass or grain yield, respectively. Increases in biomass and grain yield were reflected in significant increases in numbers of spikelets, primary and secondary florets, and tillers per plant. Competitive advantages and disadvantages were greatest in the interspecific comparisons

A segmentation approach to delineate zones for differential nitrogen intervention.

Multi-source and -temporal data integration is expected to support the delineation of within-field management zones that may better conform to unique combinations of crop yield variations. This work addresses the evaluation of zone delineation approaches based on image classification and segmentation methods. An object based segmentation is introduced using ancillary data from multivariate analysis of yield maps. A simple economic evaluation is conducted to compare delineation methods aiming variable-rate Nitrogen applications. Advantages and penalties are suggested for 2, 3, and 4 management zones. Results show that a procedure combining multiresolution, watershed and region grow segmentation algorithms has systematically resulted in greater net worth. It is suggested that segmentation methods have potential application for zone management delineations supporting contiguous patter

Spatially explicit seasonal forecasting using fuzzy spatiotemporal clustering of long-term daily rainfall and temperature data

International audienceA major limitation of statistical forecasts for specific weather station sites is that they are not spatial in the true sense. And while spatial predictions have been studied, their results have indicated a lack of seasonality. Global Circulation Models (GCMs) are spatial, but their spatial resolution is rather coarse. Here we propose spatially explicit seasonal forecasting, based on the Fuzzy Classification of long-term (40 years) daily rainfall and temperature data to create climate memberships over time and location. Data were obtained from weather stations across south-east Australia, covering sub-tropical to arid climate zones. Class memberships were used to produce seasonal predictions using correlations with climate drivers and a regression rules approach. Therefore, this model includes both local climate feedback and the continental drivers. The developed seasonal forecasting model predicts rainfall and temperature reasonably accurately. The final 6-month forecast for average maximum temperature and rainfall produced relative errors of 0.89 and 0.56 and Pearson correlation coefficients of 0.83 and 0.82, respectively

Soil properties drive microbial community structure in a large scale transect in South Eastern Australia

Soil microbial communities directly affect soil functionality through their roles in the cycling of soil nutrients and carbon storage. Microbial communities vary substantially in space and time, between soil types and under different land management. The mechanisms that control the spatial distributions of soil microbes are largely unknown as we have not been able to adequately upscale a detailed analysis of the microbiome in a few grams of soil to that of a catchment, region or continent. Here we reveal that soil microbes along a 1000 km transect have unique spatial structures that are governed mainly by soil properties. The soil microbial community assessed using Phospholipid Fatty Acids showed a strong gradient along the latitude gradient across New South Wales, Australia. We found that soil properties contributed the most to the microbial distribution, while other environmental factors (e.g., temperature, elevation) showed lesser impact. Agricultural activities reduced the variation of the microbial communities, however, its influence was local and much less than the overall influence of soil properties. The ability to predict the soil and environmental factors that control microbial distribution will allow us to predict how future soil and environmental change will affect the spatial distribution of microbes

Using deep learning for digital soil mapping

Digital soil mapping (DSM) has been widely used as a cost-effective method for generating soil maps. However, current DSM data representation rarely incorporates contextual information of the landscape. DSM models are usually calibrated using point observations intersected with spatially corresponding point covariates. Here, we demonstrate the use of the convolutional neural network (CNN) model that incorporates contextual information surrounding an observation to significantly improve the prediction accuracy over conventional DSM models. We describe a CNN model that takes inputs as images of covariates and explores spatial contextual information by finding non-linear local spatial relationships of neighbouring pixels. Unique features of the proposed model include input represented as a 3-D stack of images, data augmentation to reduce overfitting, and the simultaneous prediction of multiple outputs. Using a soil mapping example in Chile, the CNN model was trained to simultaneously predict soil organic carbon at multiples depths across the country. The results showed that, in this study, the CNN model reduced the error by 30&thinsp;% compared with conventional techniques that only used point information of covariates. In the example of country-wide mapping at 100&thinsp;m resolution, the neighbourhood size from 3 to 9 pixels is more effective than at a point location and larger neighbourhood sizes. In addition, the CNN model produces less prediction uncertainty and it is able to predict soil carbon at deeper soil layers more accurately. Because the CNN model takes the covariate represented as images, it offers a simple and effective framework for future DSM models.</p

Revisão sobre funções de Pedotransferência (PTFs) e novos métodos de predição de classes e atributos do solo.

Revisão sobre o uso das funções de pedotransferência e discussão sobre os vários tipos de PTFs. Diferentes abordagens e alguns princípios são considerados para desenvolver PTFs. Um conceito de sistema de inferência de solo é proposto (SINFERS), em que funções de pedotransferência são as regras do conhecimento, para serem usadas como ferramentas de inferência. É fornecida extensa bibliografia para consulta e expansão do conhecimento e uso da metodologia de pedotransferência.bitstream/CNPS/11589/1/pedotransferencia.pd

Human-induced changes in Indonesian peatlands increase drought severity

Indonesian peatlands are critical to the global carbon cycle, but they also support a large number of local economies. Intense forest clearing and draining in these peatlands is causing severe ecological and environmental impacts. Most studies highlighted increased carbon emission in the region through drought and large-scale fires, further accelerating peatland degradation. Yet, little is known about the long-term impacts of human-induced disturbance on peatland hydrology in the tropics. Here we show that converting natural peat forests to plantations can significantly alter the hydrological system far worse than previously recognized, leading to amplified moisture stress and drought severity. This study quantified how human-induced changes to Indonesian peatlands have affected drought severity. Through field observations and modelling, we demonstrate that canalization doubled drought severity; logging and starting plantations even quadrupled drought severity. Recognizing the importance of peatlands to Indonesia, proper management, and rehabilitating peatlands remain the only viable option for continued plantation use

Microbial decomposition of organic matter and wetting–drying promotes aggregation in artificial soil but porosity increases only in wet-dry condition

Aggregation is one of the key properties influencing the function of soils, including the soil’s potential to stabilise organic carbon and create habitats for micro-organisms. The mechanisms by which organic matter influences aggregation and alters the pore geometry remain largely unknown. We hypothesised that rapid microbial processing of organic matter and wetting and drying of soil promotes aggregation and changes in pore geometry. Using microcosms of silicate clays and sand with either rapidly decomposable glucose or slowly decomposable cellulose, the degree of aggregation (P < 0.001), was greater in glucose treatments than controls that did not receive added carbon or microbial inoculum. We link this to microbial activity through measurements in soil respiration, phospholipids and microbially derived carbon. Our results demonstrate that rapid microbial decomposition of organic matter and microbially derived carbon promote aggregation and the aggregation process was particularly strong in the wet-dry condition (alternating between 30 % and 15 % water content) with significant modification of porosity (P < 0.05) of the aggregates

Use of near infrared reflectance spectroscopy to predict nitrogen uptake by winter wheat within fields with high variability in organic matter

In this study, the ability to predict N-uptake in winter wheat crops using NIR-spectroscopy on soil samples was evaluated. Soil samples were taken in unfertilized plots in one winter wheat field during three years (1997-1999) and in another winter wheat field nearby in one year (2000). Soil samples were analyzed for organic C content and their NIR-spectra. N-uptake was measured as total N-content in aboveground plant materials at harvest. Models calibrated to predict N-uptake were internally cross validated and validated across years and across fields. Cross-validated calibrations predicted N-uptake with an average error of 12.1 to 15.4 kg N ha-1. The standard deviation divided by this error (RPD) ranged between 1.9 and 2.5. In comparison, the corresponding calibrations based on organic C alone had an error from 11.7 to 28.2 kg N ha-1 and RPDs from 1.3 to 2.5. In three of four annual calibrations within a field, the NIR-based calibrations worked better than the organic C based calibrations. The prediction of N-uptake across years, but within a field, worked slightly better with an organic C based calibration than with a NIR based one, RPD = 1.9 and 1.7 respectively. Across fields, the corresponding difference was large in favour of the NIR-calibration, RPD = 2.5 for the NIR-calibration and 1.5 for the organic C calibration. It was concluded that NIR-spectroscopy integrates information about organic C with other relevant soil components and therefore has a good potential to predict complex functions of soils such as N-mineralization. A relatively good agreement of spectral relationships to parameters related to the N-mineralization of datasets across the world suggests that more general models can be calibrated